miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23996 3' -59.4 NC_005262.1 + 17321 1.07 0.000656
Target:  5'- cAGACCGCAAGGAGCGCGAGCGCGUCGc -3'
miRNA:   3'- -UCUGGCGUUCCUCGCGCUCGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 29871 0.8 0.07275
Target:  5'- uGACCGaCGAGGAGCGCGcGGCGCuUCa -3'
miRNA:   3'- uCUGGC-GUUCCUCGCGC-UCGCGcAGc -5'
23996 3' -59.4 NC_005262.1 + 13457 0.77 0.106537
Target:  5'- aGGGUCGCAAGG-GCGCGAagcccgcGCGCGUCGc -3'
miRNA:   3'- -UCUGGCGUUCCuCGCGCU-------CGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 31170 0.77 0.106827
Target:  5'- cGGGCCGCGgcucgcccuucAGGucgGCGAGCGCGUCGg -3'
miRNA:   3'- -UCUGGCGU-----------UCCucgCGCUCGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 59260 0.76 0.129048
Target:  5'- -aGCaCGCGcAGGAGCGaaaCGAGCGCGUCGc -3'
miRNA:   3'- ucUG-GCGU-UCCUCGC---GCUCGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 19168 0.75 0.151418
Target:  5'- uGGCUGCAucaguucaAGGAGCGCG-GCGgCGUCa -3'
miRNA:   3'- uCUGGCGU--------UCCUCGCGCuCGC-GCAGc -5'
23996 3' -59.4 NC_005262.1 + 15596 0.73 0.20694
Target:  5'- -cGCgCGCGAGGAGCGCGugcggcaggAGCGCaUCGa -3'
miRNA:   3'- ucUG-GCGUUCCUCGCGC---------UCGCGcAGC- -5'
23996 3' -59.4 NC_005262.1 + 6262 0.73 0.217751
Target:  5'- uGACCGCGAGGcGCaG-GAGCGCGUg- -3'
miRNA:   3'- uCUGGCGUUCCuCG-CgCUCGCGCAgc -5'
23996 3' -59.4 NC_005262.1 + 44766 0.72 0.240823
Target:  5'- cGuuCGgAucGGGCGCGGGCGCGUCGc -3'
miRNA:   3'- uCugGCgUucCUCGCGCUCGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 50591 0.72 0.246902
Target:  5'- -uGCCGCucaacccGGuAGCGCGAGCGCuUCGg -3'
miRNA:   3'- ucUGGCGuu-----CC-UCGCGCUCGCGcAGC- -5'
23996 3' -59.4 NC_005262.1 + 17102 0.72 0.249368
Target:  5'- cGGGCCGCGAGGAgguccaccGCGCggcgauggaccacaaGAacgcGCGCGUCGc -3'
miRNA:   3'- -UCUGGCGUUCCU--------CGCG---------------CU----CGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 22301 0.72 0.253106
Target:  5'- cGGCCGUGAGcuugucGAGCGCGAGCccgGCGUUc -3'
miRNA:   3'- uCUGGCGUUC------CUCGCGCUCG---CGCAGc -5'
23996 3' -59.4 NC_005262.1 + 54420 0.72 0.259439
Target:  5'- uAGAUCG--AGGuGC-CGAGCGCGUCGa -3'
miRNA:   3'- -UCUGGCguUCCuCGcGCUCGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 37714 0.72 0.259439
Target:  5'- cGGCgUGCAGauGGGGCGUGAagggcuGCGCGUCGa -3'
miRNA:   3'- uCUG-GCGUU--CCUCGCGCU------CGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 42338 0.72 0.259439
Target:  5'- -cGCCGCAGuGAGCGCG-GCGC-UCGg -3'
miRNA:   3'- ucUGGCGUUcCUCGCGCuCGCGcAGC- -5'
23996 3' -59.4 NC_005262.1 + 60547 0.71 0.265248
Target:  5'- cGACCGCAAGGgcacgcugacgccGGCGCucGGCGCgGUCu -3'
miRNA:   3'- uCUGGCGUUCC-------------UCGCGc-UCGCG-CAGc -5'
23996 3' -59.4 NC_005262.1 + 60651 0.71 0.275163
Target:  5'- uAGACCGCGccGAGCGCcGGCGUcagcgugcccuugcgGUCGa -3'
miRNA:   3'- -UCUGGCGUucCUCGCGcUCGCG---------------CAGC- -5'
23996 3' -59.4 NC_005262.1 + 26667 0.71 0.279211
Target:  5'- gAGGCCGCcAGcGuaugccuGCGCGAacuggcgcaGCGCGUCGg -3'
miRNA:   3'- -UCUGGCGuUC-Cu------CGCGCU---------CGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 59551 0.71 0.279211
Target:  5'- uGGGCCaCGAGGAGCGCGAGgaGCa--- -3'
miRNA:   3'- -UCUGGcGUUCCUCGCGCUCg-CGcagc -5'
23996 3' -59.4 NC_005262.1 + 45244 0.71 0.286064
Target:  5'- cGuCCGCAcGcAGCGCGAGCGCcuuGUCGc -3'
miRNA:   3'- uCuGGCGUuCcUCGCGCUCGCG---CAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.