miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23996 3' -59.4 NC_005262.1 + 57357 0.71 0.300165
Target:  5'- cGGGCCGUGAGcuGCGCGAGCugguUGUCGa -3'
miRNA:   3'- -UCUGGCGUUCcuCGCGCUCGc---GCAGC- -5'
23996 3' -59.4 NC_005262.1 + 29497 0.71 0.300165
Target:  5'- -aGCCGCAuGGcgaucCGCGAGgGCGUCGg -3'
miRNA:   3'- ucUGGCGUuCCuc---GCGCUCgCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 5177 0.7 0.307415
Target:  5'- cGGCCgGCGucgcGGGCGCGGGCGCGgcCGg -3'
miRNA:   3'- uCUGG-CGUuc--CUCGCGCUCGCGCa-GC- -5'
23996 3' -59.4 NC_005262.1 + 11425 0.7 0.307415
Target:  5'- cGGGCCGCcgAAGGuGCGCGAcacgccgcgcccGCGCaUCGu -3'
miRNA:   3'- -UCUGGCG--UUCCuCGCGCU------------CGCGcAGC- -5'
23996 3' -59.4 NC_005262.1 + 50422 0.7 0.314797
Target:  5'- cGGAgCGCGAGGGcCGCGuGCaCGUCGu -3'
miRNA:   3'- -UCUgGCGUUCCUcGCGCuCGcGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 50370 0.7 0.321556
Target:  5'- cGGCCGUcacGGGcucggccGGCGCGGGCGCGcccUCGu -3'
miRNA:   3'- uCUGGCGu--UCC-------UCGCGCUCGCGC---AGC- -5'
23996 3' -59.4 NC_005262.1 + 12618 0.7 0.329962
Target:  5'- -cGCCGCAAcauGGAG-GCGAuCGCGUCGc -3'
miRNA:   3'- ucUGGCGUU---CCUCgCGCUcGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 48463 0.7 0.329962
Target:  5'- -uGCCGCGcGGAuCGCGAGCcGCGUgGg -3'
miRNA:   3'- ucUGGCGUuCCUcGCGCUCG-CGCAgC- -5'
23996 3' -59.4 NC_005262.1 + 18174 0.7 0.329962
Target:  5'- cGGCCGCuucGAGGcauucgagccAGUuCGAGCGCGUCa -3'
miRNA:   3'- uCUGGCG---UUCC----------UCGcGCUCGCGCAGc -5'
23996 3' -59.4 NC_005262.1 + 45338 0.7 0.337745
Target:  5'- aGGuCUGCAAGGcGGCGCGGGCGUc--- -3'
miRNA:   3'- -UCuGGCGUUCC-UCGCGCUCGCGcagc -5'
23996 3' -59.4 NC_005262.1 + 46613 0.7 0.337745
Target:  5'- -cGCCGCGcuGGGcugcuGCGCGGGCagggGCGUCGc -3'
miRNA:   3'- ucUGGCGU--UCCu----CGCGCUCG----CGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 45658 0.7 0.34566
Target:  5'- cGGCCGCAucAGGuacagcAGCGCGAGCGaaUCc -3'
miRNA:   3'- uCUGGCGU--UCC------UCGCGCUCGCgcAGc -5'
23996 3' -59.4 NC_005262.1 + 13021 0.69 0.361885
Target:  5'- aGGAgCGCGccaAGGGcuaCGCGGuGCGCGUCGa -3'
miRNA:   3'- -UCUgGCGU---UCCUc--GCGCU-CGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 52044 0.69 0.376087
Target:  5'- cGAgCGCAGGcGcGCGCGAGCGgccuccaccuugucCGUCGu -3'
miRNA:   3'- uCUgGCGUUC-CuCGCGCUCGC--------------GCAGC- -5'
23996 3' -59.4 NC_005262.1 + 33341 0.69 0.378632
Target:  5'- cGGAUCGaCAGGaAGCGCucgacguGCGCGUCGa -3'
miRNA:   3'- -UCUGGC-GUUCcUCGCGcu-----CGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 49849 0.69 0.386337
Target:  5'- cGGCCGgAGccucGGGCGCGGGCgccgccgGCGUCGg -3'
miRNA:   3'- uCUGGCgUUc---CUCGCGCUCG-------CGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 11543 0.69 0.387199
Target:  5'- cGAgCGCGguAGGcacgauGCGCGGGCGCGgCGu -3'
miRNA:   3'- uCUgGCGU--UCCu-----CGCGCUCGCGCaGC- -5'
23996 3' -59.4 NC_005262.1 + 17173 0.69 0.387199
Target:  5'- aAGGCCGCGcgcgAGGA-CGCGAcCGCGUUc -3'
miRNA:   3'- -UCUGGCGU----UCCUcGCGCUcGCGCAGc -5'
23996 3' -59.4 NC_005262.1 + 61163 0.69 0.387199
Target:  5'- cGGCgGCGGGcGAGCuGaCGGGCGCG-CGg -3'
miRNA:   3'- uCUGgCGUUC-CUCG-C-GCUCGCGCaGC- -5'
23996 3' -59.4 NC_005262.1 + 62918 0.69 0.387199
Target:  5'- uGGCgCGCAaucucauggcaaAGGAcgaGCGCGAuuugcGCGCGUCGc -3'
miRNA:   3'- uCUG-GCGU------------UCCU---CGCGCU-----CGCGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.