miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23996 3' -59.4 NC_005262.1 + 2817 0.67 0.479459
Target:  5'- gGGACCuCGAGGcgcAGgGCGAGCGCu--- -3'
miRNA:   3'- -UCUGGcGUUCC---UCgCGCUCGCGcagc -5'
23996 3' -59.4 NC_005262.1 + 35214 0.67 0.479459
Target:  5'- cGuCCGCAAGGAuGCggaggucgGCG-GCGCGaUCGg -3'
miRNA:   3'- uCuGGCGUUCCU-CG--------CGCuCGCGC-AGC- -5'
23996 3' -59.4 NC_005262.1 + 30990 0.67 0.469735
Target:  5'- uGGugC-CAuccucGAGCGCGAGCGgCGUCa -3'
miRNA:   3'- -UCugGcGUuc---CUCGCGCUCGC-GCAGc -5'
23996 3' -59.4 NC_005262.1 + 29766 0.67 0.469735
Target:  5'- aGGAuUCGCGgguugggcGGGcuGCGCGGGCGCGggCGg -3'
miRNA:   3'- -UCU-GGCGU--------UCCu-CGCGCUCGCGCa-GC- -5'
23996 3' -59.4 NC_005262.1 + 34974 0.67 0.460113
Target:  5'- cGGCCGCAagucgaagcuccAGGcagccgggcagcAGCGCGGGCcCGUCc -3'
miRNA:   3'- uCUGGCGU------------UCC------------UCGCGCUCGcGCAGc -5'
23996 3' -59.4 NC_005262.1 + 29488 0.67 0.460113
Target:  5'- cGAgCGUcgcGAuCGCGAGCGCGUCGu -3'
miRNA:   3'- uCUgGCGuucCUcGCGCUCGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 6599 0.67 0.460113
Target:  5'- uGACgGCGAGGucGGCGCGcugaucgucgAGCGgGUUGc -3'
miRNA:   3'- uCUGgCGUUCC--UCGCGC----------UCGCgCAGC- -5'
23996 3' -59.4 NC_005262.1 + 1742 0.68 0.450596
Target:  5'- ---gUGCGAGGGGCGCGGGauucgagcuCGCGaUCGa -3'
miRNA:   3'- ucugGCGUUCCUCGCGCUC---------GCGC-AGC- -5'
23996 3' -59.4 NC_005262.1 + 25339 0.68 0.441188
Target:  5'- gAGGCgGCGcAGGAGCcgGCGuuGCGCG-CGg -3'
miRNA:   3'- -UCUGgCGU-UCCUCG--CGCu-CGCGCaGC- -5'
23996 3' -59.4 NC_005262.1 + 57935 0.68 0.441188
Target:  5'- cGGUCGCGgcauucaacguGGaGGGCGCGAGCGCGcUUGa -3'
miRNA:   3'- uCUGGCGU-----------UC-CUCGCGCUCGCGC-AGC- -5'
23996 3' -59.4 NC_005262.1 + 40236 0.68 0.441188
Target:  5'- -cGCCGCAcccuguccGGGuugcAGCGCGAGCGuCGUa- -3'
miRNA:   3'- ucUGGCGU--------UCC----UCGCGCUCGC-GCAgc -5'
23996 3' -59.4 NC_005262.1 + 49717 0.68 0.441188
Target:  5'- cGAUCGCGAGGccaccgAGCGCcugguuAGCGaCGUCGc -3'
miRNA:   3'- uCUGGCGUUCC------UCGCGc-----UCGC-GCAGC- -5'
23996 3' -59.4 NC_005262.1 + 55327 0.68 0.430048
Target:  5'- uGACCGCAuccggauuguuGAGCGCGGccuGCGCGaCGa -3'
miRNA:   3'- uCUGGCGUuc---------CUCGCGCU---CGCGCaGC- -5'
23996 3' -59.4 NC_005262.1 + 60687 0.68 0.422713
Target:  5'- uGGCgaCGCugGGcuucuuCGCGGGCGCGUCGg -3'
miRNA:   3'- uCUG--GCGuuCCuc----GCGCUCGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 61230 0.68 0.413651
Target:  5'- -cGCCGCGAucugcuGCGCcAGCGCGUCGu -3'
miRNA:   3'- ucUGGCGUUccu---CGCGcUCGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 16369 0.69 0.395892
Target:  5'- -cGCCGCGAGcGGCGCGcAGCaaggcauuGUGUCGg -3'
miRNA:   3'- ucUGGCGUUCcUCGCGC-UCG--------CGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 62918 0.69 0.387199
Target:  5'- uGGCgCGCAaucucauggcaaAGGAcgaGCGCGAuuugcGCGCGUCGc -3'
miRNA:   3'- uCUG-GCGU------------UCCU---CGCGCU-----CGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 11543 0.69 0.387199
Target:  5'- cGAgCGCGguAGGcacgauGCGCGGGCGCGgCGu -3'
miRNA:   3'- uCUgGCGU--UCCu-----CGCGCUCGCGCaGC- -5'
23996 3' -59.4 NC_005262.1 + 17173 0.69 0.387199
Target:  5'- aAGGCCGCGcgcgAGGA-CGCGAcCGCGUUc -3'
miRNA:   3'- -UCUGGCGU----UCCUcGCGCUcGCGCAGc -5'
23996 3' -59.4 NC_005262.1 + 61163 0.69 0.387199
Target:  5'- cGGCgGCGGGcGAGCuGaCGGGCGCG-CGg -3'
miRNA:   3'- uCUGgCGUUC-CUCG-C-GCUCGCGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.