miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23996 3' -59.4 NC_005262.1 + 1742 0.68 0.450596
Target:  5'- ---gUGCGAGGGGCGCGGGauucgagcuCGCGaUCGa -3'
miRNA:   3'- ucugGCGUUCCUCGCGCUC---------GCGC-AGC- -5'
23996 3' -59.4 NC_005262.1 + 2817 0.67 0.479459
Target:  5'- gGGACCuCGAGGcgcAGgGCGAGCGCu--- -3'
miRNA:   3'- -UCUGGcGUUCC---UCgCGCUCGCGcagc -5'
23996 3' -59.4 NC_005262.1 + 5177 0.7 0.307415
Target:  5'- cGGCCgGCGucgcGGGCGCGGGCGCGgcCGg -3'
miRNA:   3'- uCUGG-CGUuc--CUCGCGCUCGCGCa-GC- -5'
23996 3' -59.4 NC_005262.1 + 6262 0.73 0.217751
Target:  5'- uGACCGCGAGGcGCaG-GAGCGCGUg- -3'
miRNA:   3'- uCUGGCGUUCCuCG-CgCUCGCGCAgc -5'
23996 3' -59.4 NC_005262.1 + 6599 0.67 0.460113
Target:  5'- uGACgGCGAGGucGGCGCGcugaucgucgAGCGgGUUGc -3'
miRNA:   3'- uCUGgCGUUCC--UCGCGC----------UCGCgCAGC- -5'
23996 3' -59.4 NC_005262.1 + 7506 0.66 0.554126
Target:  5'- uGGAUCGCGacgcauccaucgggcAGGuucggcGGCGCGucGGCGCGcUCGa -3'
miRNA:   3'- -UCUGGCGU---------------UCC------UCGCGC--UCGCGC-AGC- -5'
23996 3' -59.4 NC_005262.1 + 10571 0.66 0.539685
Target:  5'- -aGCCGCAGcguaccgcGGAGCaGCGcGGCGCGagCGg -3'
miRNA:   3'- ucUGGCGUU--------CCUCG-CGC-UCGCGCa-GC- -5'
23996 3' -59.4 NC_005262.1 + 11425 0.7 0.307415
Target:  5'- cGGGCCGCcgAAGGuGCGCGAcacgccgcgcccGCGCaUCGu -3'
miRNA:   3'- -UCUGGCG--UUCCuCGCGCU------------CGCGcAGC- -5'
23996 3' -59.4 NC_005262.1 + 11543 0.69 0.387199
Target:  5'- cGAgCGCGguAGGcacgauGCGCGGGCGCGgCGu -3'
miRNA:   3'- uCUgGCGU--UCCu-----CGCGCUCGCGCaGC- -5'
23996 3' -59.4 NC_005262.1 + 12618 0.7 0.329962
Target:  5'- -cGCCGCAAcauGGAG-GCGAuCGCGUCGc -3'
miRNA:   3'- ucUGGCGUU---CCUCgCGCUcGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 13021 0.69 0.361885
Target:  5'- aGGAgCGCGccaAGGGcuaCGCGGuGCGCGUCGa -3'
miRNA:   3'- -UCUgGCGU---UCCUc--GCGCU-CGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 13457 0.77 0.106537
Target:  5'- aGGGUCGCAAGG-GCGCGAagcccgcGCGCGUCGc -3'
miRNA:   3'- -UCUGGCGUUCCuCGCGCU-------CGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 15596 0.73 0.20694
Target:  5'- -cGCgCGCGAGGAGCGCGugcggcaggAGCGCaUCGa -3'
miRNA:   3'- ucUG-GCGUUCCUCGCGC---------UCGCGcAGC- -5'
23996 3' -59.4 NC_005262.1 + 15922 0.66 0.547922
Target:  5'- -uGCCGCAucacguacugcuGGAuCGCGAGCGCGa-- -3'
miRNA:   3'- ucUGGCGUu-----------CCUcGCGCUCGCGCagc -5'
23996 3' -59.4 NC_005262.1 + 16369 0.69 0.395892
Target:  5'- -cGCCGCGAGcGGCGCGcAGCaaggcauuGUGUCGg -3'
miRNA:   3'- ucUGGCGUUCcUCGCGC-UCG--------CGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 17102 0.72 0.249368
Target:  5'- cGGGCCGCGAGGAgguccaccGCGCggcgauggaccacaaGAacgcGCGCGUCGc -3'
miRNA:   3'- -UCUGGCGUUCCU--------CGCG---------------CU----CGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 17173 0.69 0.387199
Target:  5'- aAGGCCGCGcgcgAGGA-CGCGAcCGCGUUc -3'
miRNA:   3'- -UCUGGCGU----UCCUcGCGCUcGCGCAGc -5'
23996 3' -59.4 NC_005262.1 + 17321 1.07 0.000656
Target:  5'- cAGACCGCAAGGAGCGCGAGCGCGUCGc -3'
miRNA:   3'- -UCUGGCGUUCCUCGCGCUCGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 18174 0.7 0.329962
Target:  5'- cGGCCGCuucGAGGcauucgagccAGUuCGAGCGCGUCa -3'
miRNA:   3'- uCUGGCG---UUCC----------UCGcGCUCGCGCAGc -5'
23996 3' -59.4 NC_005262.1 + 19168 0.75 0.151418
Target:  5'- uGGCUGCAucaguucaAGGAGCGCG-GCGgCGUCa -3'
miRNA:   3'- uCUGGCGU--------UCCUCGCGCuCGC-GCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.