miRNA display CGI


Results 41 - 60 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23996 3' -59.4 NC_005262.1 + 41285 0.66 0.557235
Target:  5'- cGGCCGCGcguGGGcgacaucaagguauGGCGCG-GCGCGa-- -3'
miRNA:   3'- uCUGGCGU---UCC--------------UCGCGCuCGCGCagc -5'
23996 3' -59.4 NC_005262.1 + 42338 0.72 0.259439
Target:  5'- -cGCCGCAGuGAGCGCG-GCGC-UCGg -3'
miRNA:   3'- ucUGGCGUUcCUCGCGCuCGCGcAGC- -5'
23996 3' -59.4 NC_005262.1 + 44106 0.66 0.56035
Target:  5'- uGAUCGCcuGG-GCGaaaGAGCGCaUCGg -3'
miRNA:   3'- uCUGGCGuuCCuCGCg--CUCGCGcAGC- -5'
23996 3' -59.4 NC_005262.1 + 44766 0.72 0.240823
Target:  5'- cGuuCGgAucGGGCGCGGGCGCGUCGc -3'
miRNA:   3'- uCugGCgUucCUCGCGCUCGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 45244 0.71 0.286064
Target:  5'- cGuCCGCAcGcAGCGCGAGCGCcuuGUCGc -3'
miRNA:   3'- uCuGGCGUuCcUCGCGCUCGCG---CAGC- -5'
23996 3' -59.4 NC_005262.1 + 45338 0.7 0.337745
Target:  5'- aGGuCUGCAAGGcGGCGCGGGCGUc--- -3'
miRNA:   3'- -UCuGGCGUUCC-UCGCGCUCGCGcagc -5'
23996 3' -59.4 NC_005262.1 + 45658 0.7 0.34566
Target:  5'- cGGCCGCAucAGGuacagcAGCGCGAGCGaaUCc -3'
miRNA:   3'- uCUGGCGU--UCC------UCGCGCUCGCgcAGc -5'
23996 3' -59.4 NC_005262.1 + 46613 0.7 0.337745
Target:  5'- -cGCCGCGcuGGGcugcuGCGCGGGCagggGCGUCGc -3'
miRNA:   3'- ucUGGCGU--UCCu----CGCGCUCG----CGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 47636 0.67 0.489281
Target:  5'- cGGCUGCcgGAGGAcaagaaGCGCGAG-GCGaUCGa -3'
miRNA:   3'- uCUGGCG--UUCCU------CGCGCUCgCGC-AGC- -5'
23996 3' -59.4 NC_005262.1 + 48463 0.7 0.329962
Target:  5'- -uGCCGCGcGGAuCGCGAGCcGCGUgGg -3'
miRNA:   3'- ucUGGCGUuCCUcGCGCUCG-CGCAgC- -5'
23996 3' -59.4 NC_005262.1 + 49523 0.67 0.499196
Target:  5'- aGGGCCuGCucGAGGAGCuGCcgcaGAGCGCGcUCc -3'
miRNA:   3'- -UCUGG-CG--UUCCUCG-CG----CUCGCGC-AGc -5'
23996 3' -59.4 NC_005262.1 + 49717 0.68 0.441188
Target:  5'- cGAUCGCGAGGccaccgAGCGCcugguuAGCGaCGUCGc -3'
miRNA:   3'- uCUGGCGUUCC------UCGCGc-----UCGC-GCAGC- -5'
23996 3' -59.4 NC_005262.1 + 49824 0.67 0.499196
Target:  5'- cGGCCGCGcgauGGAGCGCGcgaauggcccGGUGCcggCGg -3'
miRNA:   3'- uCUGGCGUu---CCUCGCGC----------UCGCGca-GC- -5'
23996 3' -59.4 NC_005262.1 + 49849 0.69 0.386337
Target:  5'- cGGCCGgAGccucGGGCGCGGGCgccgccgGCGUCGg -3'
miRNA:   3'- uCUGGCgUUc---CUCGCGCUCG-------CGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 50258 0.66 0.519284
Target:  5'- cGACCGCcgcaacGAGG-GCGCGccCGCGcCGg -3'
miRNA:   3'- uCUGGCG------UUCCuCGCGCucGCGCaGC- -5'
23996 3' -59.4 NC_005262.1 + 50370 0.7 0.321556
Target:  5'- cGGCCGUcacGGGcucggccGGCGCGGGCGCGcccUCGu -3'
miRNA:   3'- uCUGGCGu--UCC-------UCGCGCUCGCGC---AGC- -5'
23996 3' -59.4 NC_005262.1 + 50422 0.7 0.314797
Target:  5'- cGGAgCGCGAGGGcCGCGuGCaCGUCGu -3'
miRNA:   3'- -UCUgGCGUUCCUcGCGCuCGcGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 50591 0.72 0.246902
Target:  5'- -uGCCGCucaacccGGuAGCGCGAGCGCuUCGg -3'
miRNA:   3'- ucUGGCGuu-----CC-UCGCGCUCGCGcAGC- -5'
23996 3' -59.4 NC_005262.1 + 52044 0.69 0.376087
Target:  5'- cGAgCGCAGGcGcGCGCGAGCGgccuccaccuugucCGUCGu -3'
miRNA:   3'- uCUgGCGUUC-CuCGCGCUCGC--------------GCAGC- -5'
23996 3' -59.4 NC_005262.1 + 53755 0.67 0.509198
Target:  5'- cGACC-CAcaagaAGGAGgGCGGGCuguaCGUCGg -3'
miRNA:   3'- uCUGGcGU-----UCCUCgCGCUCGc---GCAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.