miRNA display CGI


Results 61 - 76 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23996 3' -59.4 NC_005262.1 + 54420 0.72 0.259439
Target:  5'- uAGAUCG--AGGuGC-CGAGCGCGUCGa -3'
miRNA:   3'- -UCUGGCguUCCuCGcGCUCGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 55327 0.68 0.430048
Target:  5'- uGACCGCAuccggauuguuGAGCGCGGccuGCGCGaCGa -3'
miRNA:   3'- uCUGGCGUuc---------CUCGCGCU---CGCGCaGC- -5'
23996 3' -59.4 NC_005262.1 + 56952 0.66 0.549987
Target:  5'- cGAuCCGCGcgGGcGAGUucGCGGGCGUgGUCGg -3'
miRNA:   3'- uCU-GGCGU--UC-CUCG--CGCUCGCG-CAGC- -5'
23996 3' -59.4 NC_005262.1 + 57357 0.71 0.300165
Target:  5'- cGGGCCGUGAGcuGCGCGAGCugguUGUCGa -3'
miRNA:   3'- -UCUGGCGUUCcuCGCGCUCGc---GCAGC- -5'
23996 3' -59.4 NC_005262.1 + 57935 0.68 0.441188
Target:  5'- cGGUCGCGgcauucaacguGGaGGGCGCGAGCGCGcUUGa -3'
miRNA:   3'- uCUGGCGU-----------UC-CUCGCGCUCGCGC-AGC- -5'
23996 3' -59.4 NC_005262.1 + 58064 0.66 0.539685
Target:  5'- --uCCGU-AGGAGaUGCGGGCGCGcCa -3'
miRNA:   3'- ucuGGCGuUCCUC-GCGCUCGCGCaGc -5'
23996 3' -59.4 NC_005262.1 + 59260 0.76 0.129048
Target:  5'- -aGCaCGCGcAGGAGCGaaaCGAGCGCGUCGc -3'
miRNA:   3'- ucUG-GCGU-UCCUCGC---GCUCGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 59516 0.67 0.508194
Target:  5'- gAGGCCGUAGGccagcuucaggucGAGCGUu-GCGCGUgCGa -3'
miRNA:   3'- -UCUGGCGUUC-------------CUCGCGcuCGCGCA-GC- -5'
23996 3' -59.4 NC_005262.1 + 59551 0.71 0.279211
Target:  5'- uGGGCCaCGAGGAGCGCGAGgaGCa--- -3'
miRNA:   3'- -UCUGGcGUUCCUCGCGCUCg-CGcagc -5'
23996 3' -59.4 NC_005262.1 + 60547 0.71 0.265248
Target:  5'- cGACCGCAAGGgcacgcugacgccGGCGCucGGCGCgGUCu -3'
miRNA:   3'- uCUGGCGUUCC-------------UCGCGc-UCGCG-CAGc -5'
23996 3' -59.4 NC_005262.1 + 60651 0.71 0.275163
Target:  5'- uAGACCGCGccGAGCGCcGGCGUcagcgugcccuugcgGUCGa -3'
miRNA:   3'- -UCUGGCGUucCUCGCGcUCGCG---------------CAGC- -5'
23996 3' -59.4 NC_005262.1 + 60687 0.68 0.422713
Target:  5'- uGGCgaCGCugGGcuucuuCGCGGGCGCGUCGg -3'
miRNA:   3'- uCUG--GCGuuCCuc----GCGCUCGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 61163 0.69 0.387199
Target:  5'- cGGCgGCGGGcGAGCuGaCGGGCGCG-CGg -3'
miRNA:   3'- uCUGgCGUUC-CUCG-C-GCUCGCGCaGC- -5'
23996 3' -59.4 NC_005262.1 + 61230 0.68 0.413651
Target:  5'- -cGCCGCGAucugcuGCGCcAGCGCGUCGu -3'
miRNA:   3'- ucUGGCGUUccu---CGCGcUCGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 62690 0.66 0.539685
Target:  5'- cGGCgGCAgGGGAGCGCGAcgauggguaaucGCGCa--- -3'
miRNA:   3'- uCUGgCGU-UCCUCGCGCU------------CGCGcagc -5'
23996 3' -59.4 NC_005262.1 + 62918 0.69 0.387199
Target:  5'- uGGCgCGCAaucucauggcaaAGGAcgaGCGCGAuuugcGCGCGUCGc -3'
miRNA:   3'- uCUG-GCGU------------UCCU---CGCGCU-----CGCGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.