miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23996 3' -59.4 NC_005262.1 + 34025 0.67 0.489281
Target:  5'- cGGGCCGCAucGuGCGC---CGCGUCGa -3'
miRNA:   3'- -UCUGGCGUucCuCGCGcucGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 33341 0.69 0.378632
Target:  5'- cGGAUCGaCAGGaAGCGCucgacguGCGCGUCGa -3'
miRNA:   3'- -UCUGGC-GUUCcUCGCGcu-----CGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 31348 0.67 0.496212
Target:  5'- cGACUGCGgcugccgaucgaugGGGAcCGacuuGGGCGCGUCGa -3'
miRNA:   3'- uCUGGCGU--------------UCCUcGCg---CUCGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 31170 0.77 0.106827
Target:  5'- cGGGCCGCGgcucgcccuucAGGucgGCGAGCGCGUCGg -3'
miRNA:   3'- -UCUGGCGU-----------UCCucgCGCUCGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 30990 0.67 0.469735
Target:  5'- uGGugC-CAuccucGAGCGCGAGCGgCGUCa -3'
miRNA:   3'- -UCugGcGUuc---CUCGCGCUCGC-GCAGc -5'
23996 3' -59.4 NC_005262.1 + 29871 0.8 0.07275
Target:  5'- uGACCGaCGAGGAGCGCGcGGCGCuUCa -3'
miRNA:   3'- uCUGGC-GUUCCUCGCGC-UCGCGcAGc -5'
23996 3' -59.4 NC_005262.1 + 29766 0.67 0.469735
Target:  5'- aGGAuUCGCGgguugggcGGGcuGCGCGGGCGCGggCGg -3'
miRNA:   3'- -UCU-GGCGU--------UCCu-CGCGCUCGCGCa-GC- -5'
23996 3' -59.4 NC_005262.1 + 29497 0.71 0.300165
Target:  5'- -aGCCGCAuGGcgaucCGCGAGgGCGUCGg -3'
miRNA:   3'- ucUGGCGUuCCuc---GCGCUCgCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 29488 0.67 0.460113
Target:  5'- cGAgCGUcgcGAuCGCGAGCGCGUCGu -3'
miRNA:   3'- uCUgGCGuucCUcGCGCUCGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 27872 0.67 0.509198
Target:  5'- cGGCgGCAAGGcGGC-CGAGCGCa--- -3'
miRNA:   3'- uCUGgCGUUCC-UCGcGCUCGCGcagc -5'
23996 3' -59.4 NC_005262.1 + 27074 0.66 0.539685
Target:  5'- cGGCgCGCucGGcGGGCGUGAGCGaugccauuucuuCGUCGg -3'
miRNA:   3'- uCUG-GCGu-UC-CUCGCGCUCGC------------GCAGC- -5'
23996 3' -59.4 NC_005262.1 + 26667 0.71 0.279211
Target:  5'- gAGGCCGCcAGcGuaugccuGCGCGAacuggcgcaGCGCGUCGg -3'
miRNA:   3'- -UCUGGCGuUC-Cu------CGCGCU---------CGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 25339 0.68 0.441188
Target:  5'- gAGGCgGCGcAGGAGCcgGCGuuGCGCG-CGg -3'
miRNA:   3'- -UCUGgCGU-UCCUCG--CGCu-CGCGCaGC- -5'
23996 3' -59.4 NC_005262.1 + 23018 0.67 0.499196
Target:  5'- --cUCGCGcGGAGCauggcgucgGCGAGCGCGUa- -3'
miRNA:   3'- ucuGGCGUuCCUCG---------CGCUCGCGCAgc -5'
23996 3' -59.4 NC_005262.1 + 22301 0.72 0.253106
Target:  5'- cGGCCGUGAGcuugucGAGCGCGAGCccgGCGUUc -3'
miRNA:   3'- uCUGGCGUUC------CUCGCGCUCG---CGCAGc -5'
23996 3' -59.4 NC_005262.1 + 20578 0.66 0.519284
Target:  5'- cAGcCCgGCGAGcAGCGCGcGGCGCGcCGc -3'
miRNA:   3'- -UCuGG-CGUUCcUCGCGC-UCGCGCaGC- -5'
23996 3' -59.4 NC_005262.1 + 19168 0.75 0.151418
Target:  5'- uGGCUGCAucaguucaAGGAGCGCG-GCGgCGUCa -3'
miRNA:   3'- uCUGGCGU--------UCCUCGCGCuCGC-GCAGc -5'
23996 3' -59.4 NC_005262.1 + 18174 0.7 0.329962
Target:  5'- cGGCCGCuucGAGGcauucgagccAGUuCGAGCGCGUCa -3'
miRNA:   3'- uCUGGCG---UUCC----------UCGcGCUCGCGCAGc -5'
23996 3' -59.4 NC_005262.1 + 17321 1.07 0.000656
Target:  5'- cAGACCGCAAGGAGCGCGAGCGCGUCGc -3'
miRNA:   3'- -UCUGGCGUUCCUCGCGCUCGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 17173 0.69 0.387199
Target:  5'- aAGGCCGCGcgcgAGGA-CGCGAcCGCGUUc -3'
miRNA:   3'- -UCUGGCGU----UCCUcGCGCUcGCGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.