miRNA display CGI


Results 1 - 20 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23996 3' -59.4 NC_005262.1 + 60687 0.68 0.422713
Target:  5'- uGGCgaCGCugGGcuucuuCGCGGGCGCGUCGg -3'
miRNA:   3'- uCUG--GCGuuCCuc----GCGCUCGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 11425 0.7 0.307415
Target:  5'- cGGGCCGCcgAAGGuGCGCGAcacgccgcgcccGCGCaUCGu -3'
miRNA:   3'- -UCUGGCG--UUCCuCGCGCU------------CGCGcAGC- -5'
23996 3' -59.4 NC_005262.1 + 50422 0.7 0.314797
Target:  5'- cGGAgCGCGAGGGcCGCGuGCaCGUCGu -3'
miRNA:   3'- -UCUgGCGUUCCUcGCGCuCGcGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 48463 0.7 0.329962
Target:  5'- -uGCCGCGcGGAuCGCGAGCcGCGUgGg -3'
miRNA:   3'- ucUGGCGUuCCUcGCGCUCG-CGCAgC- -5'
23996 3' -59.4 NC_005262.1 + 45338 0.7 0.337745
Target:  5'- aGGuCUGCAAGGcGGCGCGGGCGUc--- -3'
miRNA:   3'- -UCuGGCGUUCC-UCGCGCUCGCGcagc -5'
23996 3' -59.4 NC_005262.1 + 13021 0.69 0.361885
Target:  5'- aGGAgCGCGccaAGGGcuaCGCGGuGCGCGUCGa -3'
miRNA:   3'- -UCUgGCGU---UCCUc--GCGCU-CGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 17173 0.69 0.387199
Target:  5'- aAGGCCGCGcgcgAGGA-CGCGAcCGCGUUc -3'
miRNA:   3'- -UCUGGCGU----UCCUcGCGCUcGCGCAGc -5'
23996 3' -59.4 NC_005262.1 + 61163 0.69 0.387199
Target:  5'- cGGCgGCGGGcGAGCuGaCGGGCGCG-CGg -3'
miRNA:   3'- uCUGgCGUUC-CUCG-C-GCUCGCGCaGC- -5'
23996 3' -59.4 NC_005262.1 + 62918 0.69 0.387199
Target:  5'- uGGCgCGCAaucucauggcaaAGGAcgaGCGCGAuuugcGCGCGUCGc -3'
miRNA:   3'- uCUG-GCGU------------UCCU---CGCGCU-----CGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 5177 0.7 0.307415
Target:  5'- cGGCCgGCGucgcGGGCGCGGGCGCGgcCGg -3'
miRNA:   3'- uCUGG-CGUuc--CUCGCGCUCGCGCa-GC- -5'
23996 3' -59.4 NC_005262.1 + 29497 0.71 0.300165
Target:  5'- -aGCCGCAuGGcgaucCGCGAGgGCGUCGg -3'
miRNA:   3'- ucUGGCGUuCCuc---GCGCUCgCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 59551 0.71 0.279211
Target:  5'- uGGGCCaCGAGGAGCGCGAGgaGCa--- -3'
miRNA:   3'- -UCUGGcGUUCCUCGCGCUCg-CGcagc -5'
23996 3' -59.4 NC_005262.1 + 29871 0.8 0.07275
Target:  5'- uGACCGaCGAGGAGCGCGcGGCGCuUCa -3'
miRNA:   3'- uCUGGC-GUUCCUCGCGC-UCGCGcAGc -5'
23996 3' -59.4 NC_005262.1 + 13457 0.77 0.106537
Target:  5'- aGGGUCGCAAGG-GCGCGAagcccgcGCGCGUCGc -3'
miRNA:   3'- -UCUGGCGUUCCuCGCGCU-------CGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 59260 0.76 0.129048
Target:  5'- -aGCaCGCGcAGGAGCGaaaCGAGCGCGUCGc -3'
miRNA:   3'- ucUG-GCGU-UCCUCGC---GCUCGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 15596 0.73 0.20694
Target:  5'- -cGCgCGCGAGGAGCGCGugcggcaggAGCGCaUCGa -3'
miRNA:   3'- ucUG-GCGUUCCUCGCGC---------UCGCGcAGC- -5'
23996 3' -59.4 NC_005262.1 + 50591 0.72 0.246902
Target:  5'- -uGCCGCucaacccGGuAGCGCGAGCGCuUCGg -3'
miRNA:   3'- ucUGGCGuu-----CC-UCGCGCUCGCGcAGC- -5'
23996 3' -59.4 NC_005262.1 + 17102 0.72 0.249368
Target:  5'- cGGGCCGCGAGGAgguccaccGCGCggcgauggaccacaaGAacgcGCGCGUCGc -3'
miRNA:   3'- -UCUGGCGUUCCU--------CGCG---------------CU----CGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 37714 0.72 0.259439
Target:  5'- cGGCgUGCAGauGGGGCGUGAagggcuGCGCGUCGa -3'
miRNA:   3'- uCUG-GCGUU--CCUCGCGCU------CGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 60547 0.71 0.265248
Target:  5'- cGACCGCAAGGgcacgcugacgccGGCGCucGGCGCgGUCu -3'
miRNA:   3'- uCUGGCGUUCC-------------UCGCGc-UCGCG-CAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.