Results 61 - 76 of 76 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23996 | 3' | -59.4 | NC_005262.1 | + | 27074 | 0.66 | 0.539685 |
Target: 5'- cGGCgCGCucGGcGGGCGUGAGCGaugccauuucuuCGUCGg -3' miRNA: 3'- uCUG-GCGu-UC-CUCGCGCUCGC------------GCAGC- -5' |
|||||||
23996 | 3' | -59.4 | NC_005262.1 | + | 59516 | 0.67 | 0.508194 |
Target: 5'- gAGGCCGUAGGccagcuucaggucGAGCGUu-GCGCGUgCGa -3' miRNA: 3'- -UCUGGCGUUC-------------CUCGCGcuCGCGCA-GC- -5' |
|||||||
23996 | 3' | -59.4 | NC_005262.1 | + | 23018 | 0.67 | 0.499196 |
Target: 5'- --cUCGCGcGGAGCauggcgucgGCGAGCGCGUa- -3' miRNA: 3'- ucuGGCGUuCCUCG---------CGCUCGCGCAgc -5' |
|||||||
23996 | 3' | -59.4 | NC_005262.1 | + | 31348 | 0.67 | 0.496212 |
Target: 5'- cGACUGCGgcugccgaucgaugGGGAcCGacuuGGGCGCGUCGa -3' miRNA: 3'- uCUGGCGU--------------UCCUcGCg---CUCGCGCAGC- -5' |
|||||||
23996 | 3' | -59.4 | NC_005262.1 | + | 2817 | 0.67 | 0.479459 |
Target: 5'- gGGACCuCGAGGcgcAGgGCGAGCGCu--- -3' miRNA: 3'- -UCUGGcGUUCC---UCgCGCUCGCGcagc -5' |
|||||||
23996 | 3' | -59.4 | NC_005262.1 | + | 29766 | 0.67 | 0.469735 |
Target: 5'- aGGAuUCGCGgguugggcGGGcuGCGCGGGCGCGggCGg -3' miRNA: 3'- -UCU-GGCGU--------UCCu-CGCGCUCGCGCa-GC- -5' |
|||||||
23996 | 3' | -59.4 | NC_005262.1 | + | 30990 | 0.67 | 0.469735 |
Target: 5'- uGGugC-CAuccucGAGCGCGAGCGgCGUCa -3' miRNA: 3'- -UCugGcGUuc---CUCGCGCUCGC-GCAGc -5' |
|||||||
23996 | 3' | -59.4 | NC_005262.1 | + | 29488 | 0.67 | 0.460113 |
Target: 5'- cGAgCGUcgcGAuCGCGAGCGCGUCGu -3' miRNA: 3'- uCUgGCGuucCUcGCGCUCGCGCAGC- -5' |
|||||||
23996 | 3' | -59.4 | NC_005262.1 | + | 6599 | 0.67 | 0.460113 |
Target: 5'- uGACgGCGAGGucGGCGCGcugaucgucgAGCGgGUUGc -3' miRNA: 3'- uCUGgCGUUCC--UCGCGC----------UCGCgCAGC- -5' |
|||||||
23996 | 3' | -59.4 | NC_005262.1 | + | 40236 | 0.68 | 0.441188 |
Target: 5'- -cGCCGCAcccuguccGGGuugcAGCGCGAGCGuCGUa- -3' miRNA: 3'- ucUGGCGU--------UCC----UCGCGCUCGC-GCAgc -5' |
|||||||
23996 | 3' | -59.4 | NC_005262.1 | + | 49717 | 0.68 | 0.441188 |
Target: 5'- cGAUCGCGAGGccaccgAGCGCcugguuAGCGaCGUCGc -3' miRNA: 3'- uCUGGCGUUCC------UCGCGc-----UCGC-GCAGC- -5' |
|||||||
23996 | 3' | -59.4 | NC_005262.1 | + | 25339 | 0.68 | 0.441188 |
Target: 5'- gAGGCgGCGcAGGAGCcgGCGuuGCGCG-CGg -3' miRNA: 3'- -UCUGgCGU-UCCUCG--CGCu-CGCGCaGC- -5' |
|||||||
23996 | 3' | -59.4 | NC_005262.1 | + | 55327 | 0.68 | 0.430048 |
Target: 5'- uGACCGCAuccggauuguuGAGCGCGGccuGCGCGaCGa -3' miRNA: 3'- uCUGGCGUuc---------CUCGCGCU---CGCGCaGC- -5' |
|||||||
23996 | 3' | -59.4 | NC_005262.1 | + | 61230 | 0.68 | 0.413651 |
Target: 5'- -cGCCGCGAucugcuGCGCcAGCGCGUCGu -3' miRNA: 3'- ucUGGCGUUccu---CGCGcUCGCGCAGC- -5' |
|||||||
23996 | 3' | -59.4 | NC_005262.1 | + | 16369 | 0.69 | 0.395892 |
Target: 5'- -cGCCGCGAGcGGCGCGcAGCaaggcauuGUGUCGg -3' miRNA: 3'- ucUGGCGUUCcUCGCGC-UCG--------CGCAGC- -5' |
|||||||
23996 | 3' | -59.4 | NC_005262.1 | + | 15922 | 0.66 | 0.547922 |
Target: 5'- -uGCCGCAucacguacugcuGGAuCGCGAGCGCGa-- -3' miRNA: 3'- ucUGGCGUu-----------CCUcGCGCUCGCGCagc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home