miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23996 3' -59.4 NC_005262.1 + 15922 0.66 0.547922
Target:  5'- -uGCCGCAucacguacugcuGGAuCGCGAGCGCGa-- -3'
miRNA:   3'- ucUGGCGUu-----------CCUcGCGCUCGCGCagc -5'
23996 3' -59.4 NC_005262.1 + 11543 0.69 0.387199
Target:  5'- cGAgCGCGguAGGcacgauGCGCGGGCGCGgCGu -3'
miRNA:   3'- uCUgGCGU--UCCu-----CGCGCUCGCGCaGC- -5'
23996 3' -59.4 NC_005262.1 + 33341 0.69 0.378632
Target:  5'- cGGAUCGaCAGGaAGCGCucgacguGCGCGUCGa -3'
miRNA:   3'- -UCUGGC-GUUCcUCGCGcu-----CGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 31170 0.77 0.106827
Target:  5'- cGGGCCGCGgcucgcccuucAGGucgGCGAGCGCGUCGg -3'
miRNA:   3'- -UCUGGCGU-----------UCCucgCGCUCGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 23018 0.67 0.499196
Target:  5'- --cUCGCGcGGAGCauggcgucgGCGAGCGCGUa- -3'
miRNA:   3'- ucuGGCGUuCCUCG---------CGCUCGCGCAgc -5'
23996 3' -59.4 NC_005262.1 + 31348 0.67 0.496212
Target:  5'- cGACUGCGgcugccgaucgaugGGGAcCGacuuGGGCGCGUCGa -3'
miRNA:   3'- uCUGGCGU--------------UCCUcGCg---CUCGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 29766 0.67 0.469735
Target:  5'- aGGAuUCGCGgguugggcGGGcuGCGCGGGCGCGggCGg -3'
miRNA:   3'- -UCU-GGCGU--------UCCu-CGCGCUCGCGCa-GC- -5'
23996 3' -59.4 NC_005262.1 + 30990 0.67 0.469735
Target:  5'- uGGugC-CAuccucGAGCGCGAGCGgCGUCa -3'
miRNA:   3'- -UCugGcGUuc---CUCGCGCUCGC-GCAGc -5'
23996 3' -59.4 NC_005262.1 + 40236 0.68 0.441188
Target:  5'- -cGCCGCAcccuguccGGGuugcAGCGCGAGCGuCGUa- -3'
miRNA:   3'- ucUGGCGU--------UCC----UCGCGCUCGC-GCAgc -5'
23996 3' -59.4 NC_005262.1 + 16369 0.69 0.395892
Target:  5'- -cGCCGCGAGcGGCGCGcAGCaaggcauuGUGUCGg -3'
miRNA:   3'- ucUGGCGUUCcUCGCGC-UCG--------CGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 25339 0.68 0.441188
Target:  5'- gAGGCgGCGcAGGAGCcgGCGuuGCGCG-CGg -3'
miRNA:   3'- -UCUGgCGU-UCCUCG--CGCu-CGCGCaGC- -5'
23996 3' -59.4 NC_005262.1 + 6599 0.67 0.460113
Target:  5'- uGACgGCGAGGucGGCGCGcugaucgucgAGCGgGUUGc -3'
miRNA:   3'- uCUGgCGUUCC--UCGCGC----------UCGCgCAGC- -5'
23996 3' -59.4 NC_005262.1 + 58064 0.66 0.539685
Target:  5'- --uCCGU-AGGAGaUGCGGGCGCGcCa -3'
miRNA:   3'- ucuGGCGuUCCUC-GCGCUCGCGCaGc -5'
23996 3' -59.4 NC_005262.1 + 55327 0.68 0.430048
Target:  5'- uGACCGCAuccggauuguuGAGCGCGGccuGCGCGaCGa -3'
miRNA:   3'- uCUGGCGUuc---------CUCGCGCU---CGCGCaGC- -5'
23996 3' -59.4 NC_005262.1 + 27074 0.66 0.539685
Target:  5'- cGGCgCGCucGGcGGGCGUGAGCGaugccauuucuuCGUCGg -3'
miRNA:   3'- uCUG-GCGu-UC-CUCGCGCUCGC------------GCAGC- -5'
23996 3' -59.4 NC_005262.1 + 29488 0.67 0.460113
Target:  5'- cGAgCGUcgcGAuCGCGAGCGCGUCGu -3'
miRNA:   3'- uCUgGCGuucCUcGCGCUCGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 61230 0.68 0.413651
Target:  5'- -cGCCGCGAucugcuGCGCcAGCGCGUCGu -3'
miRNA:   3'- ucUGGCGUUccu---CGCGcUCGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 49849 0.69 0.386337
Target:  5'- cGGCCGgAGccucGGGCGCGGGCgccgccgGCGUCGg -3'
miRNA:   3'- uCUGGCgUUc---CUCGCGCUCG-------CGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 59516 0.67 0.508194
Target:  5'- gAGGCCGUAGGccagcuucaggucGAGCGUu-GCGCGUgCGa -3'
miRNA:   3'- -UCUGGCGUUC-------------CUCGCGcuCGCGCA-GC- -5'
23996 3' -59.4 NC_005262.1 + 2817 0.67 0.479459
Target:  5'- gGGACCuCGAGGcgcAGgGCGAGCGCu--- -3'
miRNA:   3'- -UCUGGcGUUCC---UCgCGCUCGCGcagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.