miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23996 3' -59.4 NC_005262.1 + 49717 0.68 0.441188
Target:  5'- cGAUCGCGAGGccaccgAGCGCcugguuAGCGaCGUCGc -3'
miRNA:   3'- uCUGGCGUUCC------UCGCGc-----UCGC-GCAGC- -5'
23996 3' -59.4 NC_005262.1 + 31348 0.67 0.496212
Target:  5'- cGACUGCGgcugccgaucgaugGGGAcCGacuuGGGCGCGUCGa -3'
miRNA:   3'- uCUGGCGU--------------UCCUcGCg---CUCGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 6262 0.73 0.217751
Target:  5'- uGACCGCGAGGcGCaG-GAGCGCGUg- -3'
miRNA:   3'- uCUGGCGUUCCuCG-CgCUCGCGCAgc -5'
23996 3' -59.4 NC_005262.1 + 45244 0.71 0.286064
Target:  5'- cGuCCGCAcGcAGCGCGAGCGCcuuGUCGc -3'
miRNA:   3'- uCuGGCGUuCcUCGCGCUCGCG---CAGC- -5'
23996 3' -59.4 NC_005262.1 + 33341 0.69 0.378632
Target:  5'- cGGAUCGaCAGGaAGCGCucgacguGCGCGUCGa -3'
miRNA:   3'- -UCUGGC-GUUCcUCGCGcu-----CGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 23018 0.67 0.499196
Target:  5'- --cUCGCGcGGAGCauggcgucgGCGAGCGCGUa- -3'
miRNA:   3'- ucuGGCGUuCCUCG---------CGCUCGCGCAgc -5'
23996 3' -59.4 NC_005262.1 + 57357 0.71 0.300165
Target:  5'- cGGGCCGUGAGcuGCGCGAGCugguUGUCGa -3'
miRNA:   3'- -UCUGGCGUUCcuCGCGCUCGc---GCAGC- -5'
23996 3' -59.4 NC_005262.1 + 59516 0.67 0.508194
Target:  5'- gAGGCCGUAGGccagcuucaggucGAGCGUu-GCGCGUgCGa -3'
miRNA:   3'- -UCUGGCGUUC-------------CUCGCGcuCGCGCA-GC- -5'
23996 3' -59.4 NC_005262.1 + 27074 0.66 0.539685
Target:  5'- cGGCgCGCucGGcGGGCGUGAGCGaugccauuucuuCGUCGg -3'
miRNA:   3'- uCUG-GCGu-UC-CUCGCGCUCGC------------GCAGC- -5'
23996 3' -59.4 NC_005262.1 + 52044 0.69 0.376087
Target:  5'- cGAgCGCAGGcGcGCGCGAGCGgccuccaccuugucCGUCGu -3'
miRNA:   3'- uCUgGCGUUC-CuCGCGCUCGC--------------GCAGC- -5'
23996 3' -59.4 NC_005262.1 + 19168 0.75 0.151418
Target:  5'- uGGCUGCAucaguucaAGGAGCGCG-GCGgCGUCa -3'
miRNA:   3'- uCUGGCGU--------UCCUCGCGCuCGC-GCAGc -5'
23996 3' -59.4 NC_005262.1 + 25339 0.68 0.441188
Target:  5'- gAGGCgGCGcAGGAGCcgGCGuuGCGCG-CGg -3'
miRNA:   3'- -UCUGgCGU-UCCUCG--CGCu-CGCGCaGC- -5'
23996 3' -59.4 NC_005262.1 + 12618 0.7 0.329962
Target:  5'- -cGCCGCAAcauGGAG-GCGAuCGCGUCGc -3'
miRNA:   3'- ucUGGCGUU---CCUCgCGCUcGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 26667 0.71 0.279211
Target:  5'- gAGGCCGCcAGcGuaugccuGCGCGAacuggcgcaGCGCGUCGg -3'
miRNA:   3'- -UCUGGCGuUC-Cu------CGCGCU---------CGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 54420 0.72 0.259439
Target:  5'- uAGAUCG--AGGuGC-CGAGCGCGUCGa -3'
miRNA:   3'- -UCUGGCguUCCuCGcGCUCGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 29488 0.67 0.460113
Target:  5'- cGAgCGUcgcGAuCGCGAGCGCGUCGu -3'
miRNA:   3'- uCUgGCGuucCUcGCGCUCGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 2817 0.67 0.479459
Target:  5'- gGGACCuCGAGGcgcAGgGCGAGCGCu--- -3'
miRNA:   3'- -UCUGGcGUUCC---UCgCGCUCGCGcagc -5'
23996 3' -59.4 NC_005262.1 + 48463 0.7 0.329962
Target:  5'- -uGCCGCGcGGAuCGCGAGCcGCGUgGg -3'
miRNA:   3'- ucUGGCGUuCCUcGCGCUCG-CGCAgC- -5'
23996 3' -59.4 NC_005262.1 + 27872 0.67 0.509198
Target:  5'- cGGCgGCAAGGcGGC-CGAGCGCa--- -3'
miRNA:   3'- uCUGgCGUUCC-UCGcGCUCGCGcagc -5'
23996 3' -59.4 NC_005262.1 + 49824 0.67 0.499196
Target:  5'- cGGCCGCGcgauGGAGCGCGcgaauggcccGGUGCcggCGg -3'
miRNA:   3'- uCUGGCGUu---CCUCGCGC----------UCGCGca-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.