miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23996 3' -59.4 NC_005262.1 + 34025 0.67 0.489281
Target:  5'- cGGGCCGCAucGuGCGC---CGCGUCGa -3'
miRNA:   3'- -UCUGGCGUucCuCGCGcucGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 53755 0.67 0.509198
Target:  5'- cGACC-CAcaagaAGGAGgGCGGGCuguaCGUCGg -3'
miRNA:   3'- uCUGGcGU-----UCCUCgCGCUCGc---GCAGC- -5'
23996 3' -59.4 NC_005262.1 + 17102 0.72 0.249368
Target:  5'- cGGGCCGCGAGGAgguccaccGCGCggcgauggaccacaaGAacgcGCGCGUCGc -3'
miRNA:   3'- -UCUGGCGUUCCU--------CGCG---------------CU----CGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 50591 0.72 0.246902
Target:  5'- -uGCCGCucaacccGGuAGCGCGAGCGCuUCGg -3'
miRNA:   3'- ucUGGCGuu-----CC-UCGCGCUCGCGcAGC- -5'
23996 3' -59.4 NC_005262.1 + 15596 0.73 0.20694
Target:  5'- -cGCgCGCGAGGAGCGCGugcggcaggAGCGCaUCGa -3'
miRNA:   3'- ucUG-GCGUUCCUCGCGC---------UCGCGcAGC- -5'
23996 3' -59.4 NC_005262.1 + 49523 0.67 0.499196
Target:  5'- aGGGCCuGCucGAGGAGCuGCcgcaGAGCGCGcUCc -3'
miRNA:   3'- -UCUGG-CG--UUCCUCG-CG----CUCGCGC-AGc -5'
23996 3' -59.4 NC_005262.1 + 13457 0.77 0.106537
Target:  5'- aGGGUCGCAAGG-GCGCGAagcccgcGCGCGUCGc -3'
miRNA:   3'- -UCUGGCGUUCCuCGCGCU-------CGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 27872 0.67 0.509198
Target:  5'- cGGCgGCAAGGcGGC-CGAGCGCa--- -3'
miRNA:   3'- uCUGgCGUUCC-UCGcGCUCGCGcagc -5'
23996 3' -59.4 NC_005262.1 + 29497 0.71 0.300165
Target:  5'- -aGCCGCAuGGcgaucCGCGAGgGCGUCGg -3'
miRNA:   3'- ucUGGCGUuCCuc---GCGCUCgCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 5177 0.7 0.307415
Target:  5'- cGGCCgGCGucgcGGGCGCGGGCGCGgcCGg -3'
miRNA:   3'- uCUGG-CGUuc--CUCGCGCUCGCGCa-GC- -5'
23996 3' -59.4 NC_005262.1 + 44106 0.66 0.56035
Target:  5'- uGAUCGCcuGG-GCGaaaGAGCGCaUCGg -3'
miRNA:   3'- uCUGGCGuuCCuCGCg--CUCGCGcAGC- -5'
23996 3' -59.4 NC_005262.1 + 60687 0.68 0.422713
Target:  5'- uGGCgaCGCugGGcuucuuCGCGGGCGCGUCGg -3'
miRNA:   3'- uCUG--GCGuuCCuc----GCGCUCGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 62918 0.69 0.387199
Target:  5'- uGGCgCGCAaucucauggcaaAGGAcgaGCGCGAuuugcGCGCGUCGc -3'
miRNA:   3'- uCUG-GCGU------------UCCU---CGCGCU-----CGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 57935 0.68 0.441188
Target:  5'- cGGUCGCGgcauucaacguGGaGGGCGCGAGCGCGcUUGa -3'
miRNA:   3'- uCUGGCGU-----------UC-CUCGCGCUCGCGC-AGC- -5'
23996 3' -59.4 NC_005262.1 + 1742 0.68 0.450596
Target:  5'- ---gUGCGAGGGGCGCGGGauucgagcuCGCGaUCGa -3'
miRNA:   3'- ucugGCGUUCCUCGCGCUC---------GCGC-AGC- -5'
23996 3' -59.4 NC_005262.1 + 34974 0.67 0.460113
Target:  5'- cGGCCGCAagucgaagcuccAGGcagccgggcagcAGCGCGGGCcCGUCc -3'
miRNA:   3'- uCUGGCGU------------UCC------------UCGCGCUCGcGCAGc -5'
23996 3' -59.4 NC_005262.1 + 35214 0.67 0.479459
Target:  5'- cGuCCGCAAGGAuGCggaggucgGCG-GCGCGaUCGg -3'
miRNA:   3'- uCuGGCGUUCCU-CG--------CGCuCGCGC-AGC- -5'
23996 3' -59.4 NC_005262.1 + 48463 0.7 0.329962
Target:  5'- -uGCCGCGcGGAuCGCGAGCcGCGUgGg -3'
miRNA:   3'- ucUGGCGUuCCUcGCGCUCG-CGCAgC- -5'
23996 3' -59.4 NC_005262.1 + 50422 0.7 0.314797
Target:  5'- cGGAgCGCGAGGGcCGCGuGCaCGUCGu -3'
miRNA:   3'- -UCUgGCGUUCCUcGCGCuCGcGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 11425 0.7 0.307415
Target:  5'- cGGGCCGCcgAAGGuGCGCGAcacgccgcgcccGCGCaUCGu -3'
miRNA:   3'- -UCUGGCG--UUCCuCGCGCU------------CGCGcAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.