Results 61 - 76 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23996 | 3' | -59.4 | NC_005262.1 | + | 7506 | 0.66 | 0.554126 |
Target: 5'- uGGAUCGCGacgcauccaucgggcAGGuucggcGGCGCGucGGCGCGcUCGa -3' miRNA: 3'- -UCUGGCGU---------------UCC------UCGCGC--UCGCGC-AGC- -5' |
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23996 | 3' | -59.4 | NC_005262.1 | + | 56952 | 0.66 | 0.549987 |
Target: 5'- cGAuCCGCGcgGGcGAGUucGCGGGCGUgGUCGg -3' miRNA: 3'- uCU-GGCGU--UC-CUCG--CGCUCGCG-CAGC- -5' |
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23996 | 3' | -59.4 | NC_005262.1 | + | 10571 | 0.66 | 0.539685 |
Target: 5'- -aGCCGCAGcguaccgcGGAGCaGCGcGGCGCGagCGg -3' miRNA: 3'- ucUGGCGUU--------CCUCG-CGC-UCGCGCa-GC- -5' |
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23996 | 3' | -59.4 | NC_005262.1 | + | 62690 | 0.66 | 0.539685 |
Target: 5'- cGGCgGCAgGGGAGCGCGAcgauggguaaucGCGCa--- -3' miRNA: 3'- uCUGgCGU-UCCUCGCGCU------------CGCGcagc -5' |
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23996 | 3' | -59.4 | NC_005262.1 | + | 50258 | 0.66 | 0.519284 |
Target: 5'- cGACCGCcgcaacGAGG-GCGCGccCGCGcCGg -3' miRNA: 3'- uCUGGCG------UUCCuCGCGCucGCGCaGC- -5' |
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23996 | 3' | -59.4 | NC_005262.1 | + | 20578 | 0.66 | 0.519284 |
Target: 5'- cAGcCCgGCGAGcAGCGCGcGGCGCGcCGc -3' miRNA: 3'- -UCuGG-CGUUCcUCGCGC-UCGCGCaGC- -5' |
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23996 | 3' | -59.4 | NC_005262.1 | + | 53755 | 0.67 | 0.509198 |
Target: 5'- cGACC-CAcaagaAGGAGgGCGGGCuguaCGUCGg -3' miRNA: 3'- uCUGGcGU-----UCCUCgCGCUCGc---GCAGC- -5' |
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23996 | 3' | -59.4 | NC_005262.1 | + | 49824 | 0.67 | 0.499196 |
Target: 5'- cGGCCGCGcgauGGAGCGCGcgaauggcccGGUGCcggCGg -3' miRNA: 3'- uCUGGCGUu---CCUCGCGC----------UCGCGca-GC- -5' |
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23996 | 3' | -59.4 | NC_005262.1 | + | 49523 | 0.67 | 0.499196 |
Target: 5'- aGGGCCuGCucGAGGAGCuGCcgcaGAGCGCGcUCc -3' miRNA: 3'- -UCUGG-CG--UUCCUCG-CG----CUCGCGC-AGc -5' |
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23996 | 3' | -59.4 | NC_005262.1 | + | 34025 | 0.67 | 0.489281 |
Target: 5'- cGGGCCGCAucGuGCGC---CGCGUCGa -3' miRNA: 3'- -UCUGGCGUucCuCGCGcucGCGCAGC- -5' |
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23996 | 3' | -59.4 | NC_005262.1 | + | 47636 | 0.67 | 0.489281 |
Target: 5'- cGGCUGCcgGAGGAcaagaaGCGCGAG-GCGaUCGa -3' miRNA: 3'- uCUGGCG--UUCCU------CGCGCUCgCGC-AGC- -5' |
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23996 | 3' | -59.4 | NC_005262.1 | + | 35214 | 0.67 | 0.479459 |
Target: 5'- cGuCCGCAAGGAuGCggaggucgGCG-GCGCGaUCGg -3' miRNA: 3'- uCuGGCGUUCCU-CG--------CGCuCGCGC-AGC- -5' |
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23996 | 3' | -59.4 | NC_005262.1 | + | 34974 | 0.67 | 0.460113 |
Target: 5'- cGGCCGCAagucgaagcuccAGGcagccgggcagcAGCGCGGGCcCGUCc -3' miRNA: 3'- uCUGGCGU------------UCC------------UCGCGCUCGcGCAGc -5' |
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23996 | 3' | -59.4 | NC_005262.1 | + | 1742 | 0.68 | 0.450596 |
Target: 5'- ---gUGCGAGGGGCGCGGGauucgagcuCGCGaUCGa -3' miRNA: 3'- ucugGCGUUCCUCGCGCUC---------GCGC-AGC- -5' |
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23996 | 3' | -59.4 | NC_005262.1 | + | 57935 | 0.68 | 0.441188 |
Target: 5'- cGGUCGCGgcauucaacguGGaGGGCGCGAGCGCGcUUGa -3' miRNA: 3'- uCUGGCGU-----------UC-CUCGCGCUCGCGC-AGC- -5' |
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23996 | 3' | -59.4 | NC_005262.1 | + | 17321 | 1.07 | 0.000656 |
Target: 5'- cAGACCGCAAGGAGCGCGAGCGCGUCGc -3' miRNA: 3'- -UCUGGCGUUCCUCGCGCUCGCGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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