miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23996 5' -54.8 NC_005262.1 + 55925 0.66 0.78384
Target:  5'- cGUCGACcguccgGCGAUCGAGGGCggcgGCCGu- -3'
miRNA:   3'- -UAGCUG------CGCUAGUUCUUGga--CGGCca -5'
23996 5' -54.8 NC_005262.1 + 54518 0.66 0.78384
Target:  5'- gGUCGGCGCGcgCGGcGGCCUGCg--- -3'
miRNA:   3'- -UAGCUGCGCuaGUUcUUGGACGgcca -5'
23996 5' -54.8 NC_005262.1 + 35237 0.66 0.773858
Target:  5'- -gCGGCGCGAUCGGcAGCg-GCUGGg -3'
miRNA:   3'- uaGCUGCGCUAGUUcUUGgaCGGCCa -5'
23996 5' -54.8 NC_005262.1 + 45177 0.66 0.773858
Target:  5'- --gGACGCGAUCAacauGGGuaacgGCCUGCCc-- -3'
miRNA:   3'- uagCUGCGCUAGU----UCU-----UGGACGGcca -5'
23996 5' -54.8 NC_005262.1 + 9464 0.66 0.773858
Target:  5'- --gGAgGCuGUCGccAACCUGCCGGUg -3'
miRNA:   3'- uagCUgCGcUAGUucUUGGACGGCCA- -5'
23996 5' -54.8 NC_005262.1 + 27519 0.66 0.76373
Target:  5'- gAUCGgcACGUGGUCAAGAAUCUcGaCGGa -3'
miRNA:   3'- -UAGC--UGCGCUAGUUCUUGGA-CgGCCa -5'
23996 5' -54.8 NC_005262.1 + 38515 0.66 0.76373
Target:  5'- -cCGGCGUGAUCuc-GACCgcGCCGGc -3'
miRNA:   3'- uaGCUGCGCUAGuucUUGGa-CGGCCa -5'
23996 5' -54.8 NC_005262.1 + 6577 0.66 0.753467
Target:  5'- -gCGGCGCGAUCAggcuccauuccAGAucagcgACCUcgaGCUGGUg -3'
miRNA:   3'- uaGCUGCGCUAGU-----------UCU------UGGA---CGGCCA- -5'
23996 5' -54.8 NC_005262.1 + 14646 0.66 0.743079
Target:  5'- -gCGcCGCGG-CGAGAcGCCUGCCGa- -3'
miRNA:   3'- uaGCuGCGCUaGUUCU-UGGACGGCca -5'
23996 5' -54.8 NC_005262.1 + 41182 0.66 0.743079
Target:  5'- cUCGACGUGGcCGGcggcguugacGAGCgUGCCGGg -3'
miRNA:   3'- uAGCUGCGCUaGUU----------CUUGgACGGCCa -5'
23996 5' -54.8 NC_005262.1 + 48545 0.66 0.73258
Target:  5'- cUCGAUGCG--CAGGAGCCggGCCGc- -3'
miRNA:   3'- uAGCUGCGCuaGUUCUUGGa-CGGCca -5'
23996 5' -54.8 NC_005262.1 + 28901 0.66 0.73258
Target:  5'- -gCGACGCGAgcUCGAGAugC-GCgGGc -3'
miRNA:   3'- uaGCUGCGCU--AGUUCUugGaCGgCCa -5'
23996 5' -54.8 NC_005262.1 + 24328 0.66 0.73258
Target:  5'- gGUCGGCGCGAUCGAcaugcGGCuCUGCguCGGc -3'
miRNA:   3'- -UAGCUGCGCUAGUUc----UUG-GACG--GCCa -5'
23996 5' -54.8 NC_005262.1 + 24955 0.67 0.72198
Target:  5'- -gCGGCGCGcccagcuUCAGGAACagGCCGGc -3'
miRNA:   3'- uaGCUGCGCu------AGUUCUUGgaCGGCCa -5'
23996 5' -54.8 NC_005262.1 + 6729 0.67 0.72198
Target:  5'- -gCGACGCGAUCgAAGcGCC-GCCGc- -3'
miRNA:   3'- uaGCUGCGCUAG-UUCuUGGaCGGCca -5'
23996 5' -54.8 NC_005262.1 + 49506 0.67 0.700524
Target:  5'- -gCGcaGCGCGAUCGccgAGGGCCUGCUcgaGGa -3'
miRNA:   3'- uaGC--UGCGCUAGU---UCUUGGACGG---CCa -5'
23996 5' -54.8 NC_005262.1 + 57016 0.67 0.688603
Target:  5'- cUCgGGCGCGAUCuucaaccgcuucaAGGAGCUgGCCGGc -3'
miRNA:   3'- uAG-CUGCGCUAG-------------UUCUUGGaCGGCCa -5'
23996 5' -54.8 NC_005262.1 + 22908 0.67 0.678801
Target:  5'- uUCGcCGCGAaguagUCGcGGAGCCacaUGCCGGUc -3'
miRNA:   3'- uAGCuGCGCU-----AGU-UCUUGG---ACGGCCA- -5'
23996 5' -54.8 NC_005262.1 + 33243 0.68 0.667868
Target:  5'- cAUCGACGCGcacGUCGAGcgcuuCCUGUCGa- -3'
miRNA:   3'- -UAGCUGCGC---UAGUUCuu---GGACGGCca -5'
23996 5' -54.8 NC_005262.1 + 8635 0.68 0.667868
Target:  5'- -cCGAUGCGAUCGuaGACCUuuCCGGUc -3'
miRNA:   3'- uaGCUGCGCUAGUucUUGGAc-GGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.