Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23996 | 5' | -54.8 | NC_005262.1 | + | 38429 | 0.73 | 0.370549 |
Target: 5'- -cCGGCGCGGUCGAGAucacGCCGGa -3' miRNA: 3'- uaGCUGCGCUAGUUCUuggaCGGCCa -5' |
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23996 | 5' | -54.8 | NC_005262.1 | + | 38515 | 0.66 | 0.76373 |
Target: 5'- -cCGGCGUGAUCuc-GACCgcGCCGGc -3' miRNA: 3'- uaGCUGCGCUAGuucUUGGa-CGGCCa -5' |
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23996 | 5' | -54.8 | NC_005262.1 | + | 41182 | 0.66 | 0.743079 |
Target: 5'- cUCGACGUGGcCGGcggcguugacGAGCgUGCCGGg -3' miRNA: 3'- uAGCUGCGCUaGUU----------CUUGgACGGCCa -5' |
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23996 | 5' | -54.8 | NC_005262.1 | + | 43961 | 0.71 | 0.47343 |
Target: 5'- uGUCGgccaugcGCGCGAUCGcgccgAGGuCCUGCCGGc -3' miRNA: 3'- -UAGC-------UGCGCUAGU-----UCUuGGACGGCCa -5' |
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23996 | 5' | -54.8 | NC_005262.1 | + | 45177 | 0.66 | 0.773858 |
Target: 5'- --gGACGCGAUCAacauGGGuaacgGCCUGCCc-- -3' miRNA: 3'- uagCUGCGCUAGU----UCU-----UGGACGGcca -5' |
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23996 | 5' | -54.8 | NC_005262.1 | + | 45692 | 0.69 | 0.601927 |
Target: 5'- uUCG-UGCGcAUCGAGGGCCggcaGCCGGc -3' miRNA: 3'- uAGCuGCGC-UAGUUCUUGGa---CGGCCa -5' |
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23996 | 5' | -54.8 | NC_005262.1 | + | 48545 | 0.66 | 0.73258 |
Target: 5'- cUCGAUGCG--CAGGAGCCggGCCGc- -3' miRNA: 3'- uAGCUGCGCuaGUUCUUGGa-CGGCca -5' |
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23996 | 5' | -54.8 | NC_005262.1 | + | 49506 | 0.67 | 0.700524 |
Target: 5'- -gCGcaGCGCGAUCGccgAGGGCCUGCUcgaGGa -3' miRNA: 3'- uaGC--UGCGCUAGU---UCUUGGACGG---CCa -5' |
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23996 | 5' | -54.8 | NC_005262.1 | + | 49688 | 0.68 | 0.63491 |
Target: 5'- -gCGGCGCGcgCAAccuGAACCgcgacggcgUGCCGGg -3' miRNA: 3'- uaGCUGCGCuaGUU---CUUGG---------ACGGCCa -5' |
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23996 | 5' | -54.8 | NC_005262.1 | + | 53071 | 0.7 | 0.536882 |
Target: 5'- -cCGGCGCGAUCGcGAAgCUGCUGu- -3' miRNA: 3'- uaGCUGCGCUAGUuCUUgGACGGCca -5' |
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23996 | 5' | -54.8 | NC_005262.1 | + | 54518 | 0.66 | 0.78384 |
Target: 5'- gGUCGGCGCGcgCGGcGGCCUGCg--- -3' miRNA: 3'- -UAGCUGCGCuaGUUcUUGGACGgcca -5' |
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23996 | 5' | -54.8 | NC_005262.1 | + | 55925 | 0.66 | 0.78384 |
Target: 5'- cGUCGACcguccgGCGAUCGAGGGCggcgGCCGu- -3' miRNA: 3'- -UAGCUG------CGCUAGUUCUUGga--CGGCca -5' |
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23996 | 5' | -54.8 | NC_005262.1 | + | 57016 | 0.67 | 0.688603 |
Target: 5'- cUCgGGCGCGAUCuucaaccgcuucaAGGAGCUgGCCGGc -3' miRNA: 3'- uAG-CUGCGCUAG-------------UUCUUGGaCGGCCa -5' |
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23996 | 5' | -54.8 | NC_005262.1 | + | 58949 | 0.71 | 0.444604 |
Target: 5'- gGUCGGCGCGcagCAGucGAACCaGCCGGc -3' miRNA: 3'- -UAGCUGCGCua-GUU--CUUGGaCGGCCa -5' |
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23996 | 5' | -54.8 | NC_005262.1 | + | 59285 | 0.68 | 0.656901 |
Target: 5'- cGUCG-CGCgGAUCAacgAGGACaUGCCGGa -3' miRNA: 3'- -UAGCuGCG-CUAGU---UCUUGgACGGCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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