Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23996 | 5' | -54.8 | NC_005262.1 | + | 24955 | 0.67 | 0.72198 |
Target: 5'- -gCGGCGCGcccagcuUCAGGAACagGCCGGc -3' miRNA: 3'- uaGCUGCGCu------AGUUCUUGgaCGGCCa -5' |
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23996 | 5' | -54.8 | NC_005262.1 | + | 24642 | 0.7 | 0.515708 |
Target: 5'- --gGACGCGAUCAgcAGGAUCacGCCGGc -3' miRNA: 3'- uagCUGCGCUAGU--UCUUGGa-CGGCCa -5' |
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23996 | 5' | -54.8 | NC_005262.1 | + | 24328 | 0.66 | 0.73258 |
Target: 5'- gGUCGGCGCGAUCGAcaugcGGCuCUGCguCGGc -3' miRNA: 3'- -UAGCUGCGCUAGUUc----UUG-GACG--GCCa -5' |
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23996 | 5' | -54.8 | NC_005262.1 | + | 23063 | 0.68 | 0.656901 |
Target: 5'- cAUCGACGCGAUaccGAACCcGCCcgcaGGa -3' miRNA: 3'- -UAGCUGCGCUAguuCUUGGaCGG----CCa -5' |
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23996 | 5' | -54.8 | NC_005262.1 | + | 22984 | 0.69 | 0.558349 |
Target: 5'- aGUCuucCGCGAUCGAGGAucgugcUCUGCCGGc -3' miRNA: 3'- -UAGcu-GCGCUAGUUCUU------GGACGGCCa -5' |
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23996 | 5' | -54.8 | NC_005262.1 | + | 22908 | 0.67 | 0.678801 |
Target: 5'- uUCGcCGCGAaguagUCGcGGAGCCacaUGCCGGUc -3' miRNA: 3'- uAGCuGCGCU-----AGU-UCUUGG---ACGGCCA- -5' |
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23996 | 5' | -54.8 | NC_005262.1 | + | 17364 | 1.05 | 0.00239 |
Target: 5'- gAUCGACGCGAUCAAGAACCUGCCGGUc -3' miRNA: 3'- -UAGCUGCGCUAGUUCUUGGACGGCCA- -5' |
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23996 | 5' | -54.8 | NC_005262.1 | + | 15274 | 0.7 | 0.515708 |
Target: 5'- uUCGACGCGG-CAuGGAugCUGCCaGUc -3' miRNA: 3'- uAGCUGCGCUaGU-UCUugGACGGcCA- -5' |
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23996 | 5' | -54.8 | NC_005262.1 | + | 14646 | 0.66 | 0.743079 |
Target: 5'- -gCGcCGCGG-CGAGAcGCCUGCCGa- -3' miRNA: 3'- uaGCuGCGCUaGUUCU-UGGACGGCca -5' |
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23996 | 5' | -54.8 | NC_005262.1 | + | 10976 | 0.68 | 0.645912 |
Target: 5'- uGUCGGCGCGc-CGGGAAC--GCCGGUc -3' miRNA: 3'- -UAGCUGCGCuaGUUCUUGgaCGGCCA- -5' |
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23996 | 5' | -54.8 | NC_005262.1 | + | 9464 | 0.66 | 0.773858 |
Target: 5'- --gGAgGCuGUCGccAACCUGCCGGUg -3' miRNA: 3'- uagCUgCGcUAGUucUUGGACGGCCA- -5' |
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23996 | 5' | -54.8 | NC_005262.1 | + | 8635 | 0.68 | 0.667868 |
Target: 5'- -cCGAUGCGAUCGuaGACCUuuCCGGUc -3' miRNA: 3'- uaGCUGCGCUAGUucUUGGAc-GGCCA- -5' |
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23996 | 5' | -54.8 | NC_005262.1 | + | 6729 | 0.67 | 0.72198 |
Target: 5'- -gCGACGCGAUCgAAGcGCC-GCCGc- -3' miRNA: 3'- uaGCUGCGCUAG-UUCuUGGaCGGCca -5' |
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23996 | 5' | -54.8 | NC_005262.1 | + | 6577 | 0.66 | 0.753467 |
Target: 5'- -gCGGCGCGAUCAggcuccauuccAGAucagcgACCUcgaGCUGGUg -3' miRNA: 3'- uaGCUGCGCUAGU-----------UCU------UGGA---CGGCCA- -5' |
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23996 | 5' | -54.8 | NC_005262.1 | + | 5306 | 0.74 | 0.336814 |
Target: 5'- gGUCGAgGCGGUC-GGAGCUgGCCGGc -3' miRNA: 3'- -UAGCUgCGCUAGuUCUUGGaCGGCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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