miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23996 5' -54.8 NC_005262.1 + 45177 0.66 0.773858
Target:  5'- --gGACGCGAUCAacauGGGuaacgGCCUGCCc-- -3'
miRNA:   3'- uagCUGCGCUAGU----UCU-----UGGACGGcca -5'
23996 5' -54.8 NC_005262.1 + 33243 0.68 0.667868
Target:  5'- cAUCGACGCGcacGUCGAGcgcuuCCUGUCGa- -3'
miRNA:   3'- -UAGCUGCGC---UAGUUCuu---GGACGGCca -5'
23996 5' -54.8 NC_005262.1 + 57016 0.67 0.688603
Target:  5'- cUCgGGCGCGAUCuucaaccgcuucaAGGAGCUgGCCGGc -3'
miRNA:   3'- uAG-CUGCGCUAG-------------UUCUUGGaCGGCCa -5'
23996 5' -54.8 NC_005262.1 + 49506 0.67 0.700524
Target:  5'- -gCGcaGCGCGAUCGccgAGGGCCUGCUcgaGGa -3'
miRNA:   3'- uaGC--UGCGCUAGU---UCUUGGACGG---CCa -5'
23996 5' -54.8 NC_005262.1 + 24955 0.67 0.72198
Target:  5'- -gCGGCGCGcccagcuUCAGGAACagGCCGGc -3'
miRNA:   3'- uaGCUGCGCu------AGUUCUUGgaCGGCCa -5'
23996 5' -54.8 NC_005262.1 + 48545 0.66 0.73258
Target:  5'- cUCGAUGCG--CAGGAGCCggGCCGc- -3'
miRNA:   3'- uAGCUGCGCuaGUUCUUGGa-CGGCca -5'
23996 5' -54.8 NC_005262.1 + 24328 0.66 0.73258
Target:  5'- gGUCGGCGCGAUCGAcaugcGGCuCUGCguCGGc -3'
miRNA:   3'- -UAGCUGCGCUAGUUc----UUG-GACG--GCCa -5'
23996 5' -54.8 NC_005262.1 + 6577 0.66 0.753467
Target:  5'- -gCGGCGCGAUCAggcuccauuccAGAucagcgACCUcgaGCUGGUg -3'
miRNA:   3'- uaGCUGCGCUAGU-----------UCU------UGGA---CGGCCA- -5'
23996 5' -54.8 NC_005262.1 + 35237 0.66 0.773858
Target:  5'- -gCGGCGCGAUCGGcAGCg-GCUGGg -3'
miRNA:   3'- uaGCUGCGCUAGUUcUUGgaCGGCCa -5'
23996 5' -54.8 NC_005262.1 + 23063 0.68 0.656901
Target:  5'- cAUCGACGCGAUaccGAACCcGCCcgcaGGa -3'
miRNA:   3'- -UAGCUGCGCUAguuCUUGGaCGG----CCa -5'
23996 5' -54.8 NC_005262.1 + 59285 0.68 0.656901
Target:  5'- cGUCG-CGCgGAUCAacgAGGACaUGCCGGa -3'
miRNA:   3'- -UAGCuGCG-CUAGU---UCUUGgACGGCCa -5'
23996 5' -54.8 NC_005262.1 + 10976 0.68 0.645912
Target:  5'- uGUCGGCGCGc-CGGGAAC--GCCGGUc -3'
miRNA:   3'- -UAGCUGCGCuaGUUCUUGgaCGGCCA- -5'
23996 5' -54.8 NC_005262.1 + 5306 0.74 0.336814
Target:  5'- gGUCGAgGCGGUC-GGAGCUgGCCGGc -3'
miRNA:   3'- -UAGCUgCGCUAGuUCUUGGaCGGCCa -5'
23996 5' -54.8 NC_005262.1 + 38429 0.73 0.370549
Target:  5'- -cCGGCGCGGUCGAGAucacGCCGGa -3'
miRNA:   3'- uaGCUGCGCUAGUUCUuggaCGGCCa -5'
23996 5' -54.8 NC_005262.1 + 58949 0.71 0.444604
Target:  5'- gGUCGGCGCGcagCAGucGAACCaGCCGGc -3'
miRNA:   3'- -UAGCUGCGCua-GUU--CUUGGaCGGCCa -5'
23996 5' -54.8 NC_005262.1 + 15274 0.7 0.515708
Target:  5'- uUCGACGCGG-CAuGGAugCUGCCaGUc -3'
miRNA:   3'- uAGCUGCGCUaGU-UCUugGACGGcCA- -5'
23996 5' -54.8 NC_005262.1 + 53071 0.7 0.536882
Target:  5'- -cCGGCGCGAUCGcGAAgCUGCUGu- -3'
miRNA:   3'- uaGCUGCGCUAGUuCUUgGACGGCca -5'
23996 5' -54.8 NC_005262.1 + 28629 0.69 0.590972
Target:  5'- -aCGACGUGAaCAAGcGCCUGUCGa- -3'
miRNA:   3'- uaGCUGCGCUaGUUCuUGGACGGCca -5'
23996 5' -54.8 NC_005262.1 + 45692 0.69 0.601927
Target:  5'- uUCG-UGCGcAUCGAGGGCCggcaGCCGGc -3'
miRNA:   3'- uAGCuGCGC-UAGUUCUUGGa---CGGCCa -5'
23996 5' -54.8 NC_005262.1 + 49688 0.68 0.63491
Target:  5'- -gCGGCGCGcgCAAccuGAACCgcgacggcgUGCCGGg -3'
miRNA:   3'- uaGCUGCGCuaGUU---CUUGG---------ACGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.