miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23997 5' -54.3 NC_005262.1 + 58608 0.66 0.829354
Target:  5'- gGGGCGccuCGAUGCGCUgcaccgucagGCUCGGcagUCg -3'
miRNA:   3'- -CCCGCcu-GCUGUGCGA----------CGAGCUua-AG- -5'
23997 5' -54.3 NC_005262.1 + 63620 0.66 0.829354
Target:  5'- -cGCGGACGuACACGC-GCU-GAGUg- -3'
miRNA:   3'- ccCGCCUGC-UGUGCGaCGAgCUUAag -5'
23997 5' -54.3 NC_005262.1 + 35719 0.66 0.829354
Target:  5'- cGGCgGGACGGcCACGCUGaucCUCGcAUg- -3'
miRNA:   3'- cCCG-CCUGCU-GUGCGAC---GAGCuUAag -5'
23997 5' -54.3 NC_005262.1 + 63357 0.66 0.820298
Target:  5'- aGGCGGAU--CAUGC-GCUCGAAg-- -3'
miRNA:   3'- cCCGCCUGcuGUGCGaCGAGCUUaag -5'
23997 5' -54.3 NC_005262.1 + 48492 0.66 0.817542
Target:  5'- cGGGCGGcgcgACGGCagccgcagguaacaGCGC-GCUCGAc--- -3'
miRNA:   3'- -CCCGCC----UGCUG--------------UGCGaCGAGCUuaag -5'
23997 5' -54.3 NC_005262.1 + 21431 0.66 0.811047
Target:  5'- cGGCcGACGucCGCgaGCUGgUCGAGUUCc -3'
miRNA:   3'- cCCGcCUGCu-GUG--CGACgAGCUUAAG- -5'
23997 5' -54.3 NC_005262.1 + 21687 0.66 0.811047
Target:  5'- cGGCGG-CGcCGCGCUGCUguacgCGGGc-- -3'
miRNA:   3'- cCCGCCuGCuGUGCGACGA-----GCUUaag -5'
23997 5' -54.3 NC_005262.1 + 53047 0.66 0.811047
Target:  5'- cGGGCGuGgaguACGACGCGCUGaccggcgCGA--UCg -3'
miRNA:   3'- -CCCGC-C----UGCUGUGCGACga-----GCUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 60994 0.66 0.811047
Target:  5'- aGGCgucgaugaaGGACGACACGgUGCgcacggcCGAcUUCa -3'
miRNA:   3'- cCCG---------CCUGCUGUGCgACGa------GCUuAAG- -5'
23997 5' -54.3 NC_005262.1 + 58595 0.66 0.801611
Target:  5'- aGGGCGGuCGACugGUucagGUUCGc---- -3'
miRNA:   3'- -CCCGCCuGCUGugCGa---CGAGCuuaag -5'
23997 5' -54.3 NC_005262.1 + 277 0.66 0.800658
Target:  5'- -uGCGGAucgucacCGGCACGCUGCUguaCGAc--- -3'
miRNA:   3'- ccCGCCU-------GCUGUGCGACGA---GCUuaag -5'
23997 5' -54.3 NC_005262.1 + 6596 0.67 0.7723
Target:  5'- cGGCGaGGuCGGCGCGCUGaucgUCGAGc-- -3'
miRNA:   3'- cCCGC-CU-GCUGUGCGACg---AGCUUaag -5'
23997 5' -54.3 NC_005262.1 + 45870 0.67 0.752028
Target:  5'- aGGCGGACGGCAUcacGCUCGugaUCc -3'
miRNA:   3'- cCCGCCUGCUGUGcgaCGAGCuuaAG- -5'
23997 5' -54.3 NC_005262.1 + 24478 0.67 0.752028
Target:  5'- -cGCGGACGuGCGCGCcgccgGUUUGGcgUCg -3'
miRNA:   3'- ccCGCCUGC-UGUGCGa----CGAGCUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 61166 0.67 0.752028
Target:  5'- cGGCGGGCGagcugacggGCGCGCggcGCUaCGAGa-- -3'
miRNA:   3'- cCCGCCUGC---------UGUGCGa--CGA-GCUUaag -5'
23997 5' -54.3 NC_005262.1 + 45011 0.67 0.752028
Target:  5'- cGGCGGACGccaACACGCgGCagauggCGAGc-- -3'
miRNA:   3'- cCCGCCUGC---UGUGCGaCGa-----GCUUaag -5'
23997 5' -54.3 NC_005262.1 + 23925 0.67 0.741707
Target:  5'- aGGGCGGcgugcCGGCcuACGUUGC-CGAGUa- -3'
miRNA:   3'- -CCCGCCu----GCUG--UGCGACGaGCUUAag -5'
23997 5' -54.3 NC_005262.1 + 34220 0.67 0.731277
Target:  5'- cGGCuucGGGCGACACGCUcgacaugggcGC-CGAGUa- -3'
miRNA:   3'- cCCG---CCUGCUGUGCGA----------CGaGCUUAag -5'
23997 5' -54.3 NC_005262.1 + 24155 0.67 0.731277
Target:  5'- uGGGCGGcaggagGCG-CACGCcUGCacguuccccggCGAGUUCa -3'
miRNA:   3'- -CCCGCC------UGCuGUGCG-ACGa----------GCUUAAG- -5'
23997 5' -54.3 NC_005262.1 + 34535 0.68 0.720749
Target:  5'- uGGCGuuuuGACGACACGUUccaGCUCGGc--- -3'
miRNA:   3'- cCCGC----CUGCUGUGCGA---CGAGCUuaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.