Results 41 - 56 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23997 | 5' | -54.3 | NC_005262.1 | + | 25996 | 0.71 | 0.505677 |
Target: 5'- uGGC-GACGuaccauGCGCGCUGCUCGGcaUCg -3' miRNA: 3'- cCCGcCUGC------UGUGCGACGAGCUuaAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 1913 | 0.71 | 0.5339 |
Target: 5'- gGGGCGGAgggugcggguugcgUGGCuCGCUGgUCGuAAUUCu -3' miRNA: 3'- -CCCGCCU--------------GCUGuGCGACgAGC-UUAAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 5075 | 0.71 | 0.536013 |
Target: 5'- cGGCGG-CGGCGCGUgcgaccgGCUCGGcggugcgcgcccgGUUCa -3' miRNA: 3'- cCCGCCuGCUGUGCGa------CGAGCU-------------UAAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 12947 | 0.71 | 0.516059 |
Target: 5'- aGGGCGugcgcGACGGCAuCGCcgaccGCUCGGcgUCg -3' miRNA: 3'- -CCCGC-----CUGCUGU-GCGa----CGAGCUuaAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 45980 | 0.72 | 0.485191 |
Target: 5'- aGGGUugGGACGACAgcCGCgUGUUCGcGUUCc -3' miRNA: 3'- -CCCG--CCUGCUGU--GCG-ACGAGCuUAAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 17420 | 0.72 | 0.465109 |
Target: 5'- uGGGCgccacgcuGGACGACcuGCGCUcGUUCGAGaUCa -3' miRNA: 3'- -CCCG--------CCUGCUG--UGCGA-CGAGCUUaAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 17732 | 0.72 | 0.445468 |
Target: 5'- uGGCGGGCGAUcucuGCcuGCUGCUCGGc--- -3' miRNA: 3'- cCCGCCUGCUG----UG--CGACGAGCUuaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 15153 | 0.73 | 0.426299 |
Target: 5'- aGGCGGguacaGCGAcCAUGcCUGCUCGAAcUCg -3' miRNA: 3'- cCCGCC-----UGCU-GUGC-GACGAGCUUaAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 26556 | 0.73 | 0.416901 |
Target: 5'- -aGCGGcCGACGCGCUGCgCcAGUUCg -3' miRNA: 3'- ccCGCCuGCUGUGCGACGaGcUUAAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 52362 | 0.73 | 0.416901 |
Target: 5'- aGGCGGACGGgACGCUGgaCGcGUa- -3' miRNA: 3'- cCCGCCUGCUgUGCGACgaGCuUAag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 56093 | 0.74 | 0.363268 |
Target: 5'- -cGCGG-UGAUGCGCUGCUCGAGcgccUUCu -3' miRNA: 3'- ccCGCCuGCUGUGCGACGAGCUU----AAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 51445 | 0.75 | 0.31461 |
Target: 5'- -cGCGGACGGCGCggugccgaGCUGCauggCGGAUUCg -3' miRNA: 3'- ccCGCCUGCUGUG--------CGACGa---GCUUAAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 29739 | 0.75 | 0.31461 |
Target: 5'- gGGcGCGGGCGGCAUGCcGCUCGc---- -3' miRNA: 3'- -CC-CGCCUGCUGUGCGaCGAGCuuaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 2960 | 0.76 | 0.277954 |
Target: 5'- gGGGCGGGCacuCACGCUGCcCGGcaUCg -3' miRNA: 3'- -CCCGCCUGcu-GUGCGACGaGCUuaAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 56641 | 0.79 | 0.178501 |
Target: 5'- uGGCGGAUGAugcgccccuCGCGCUGCUCGAc--- -3' miRNA: 3'- cCCGCCUGCU---------GUGCGACGAGCUuaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 17755 | 1.13 | 0.00086 |
Target: 5'- cGGGCGGACGACACGCUGCUCGAAUUCg -3' miRNA: 3'- -CCCGCCUGCUGUGCGACGAGCUUAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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