Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23997 | 5' | -54.3 | NC_005262.1 | + | 49220 | 0.7 | 0.601605 |
Target: 5'- aGGGCGGccucgGCGGCGCGCaguccGCgcgCGAggUCc -3' miRNA: 3'- -CCCGCC-----UGCUGUGCGa----CGa--GCUuaAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 35645 | 0.69 | 0.612499 |
Target: 5'- cGGCGGGCGAUggGCUaCUCGGu--- -3' miRNA: 3'- cCCGCCUGCUGugCGAcGAGCUuaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 47800 | 0.69 | 0.664857 |
Target: 5'- aGGCGGcgagccgccgccCGGCGCGgUGCUUGGcgUCa -3' miRNA: 3'- cCCGCCu-----------GCUGUGCgACGAGCUuaAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 30095 | 0.69 | 0.612499 |
Target: 5'- aGGGC-GACGACACGCcgGCcgccgCGAAg-- -3' miRNA: 3'- -CCCGcCUGCUGUGCGa-CGa----GCUUaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 20669 | 0.69 | 0.645244 |
Target: 5'- cGGCGcGCcGCGCGCUGCUCGc---- -3' miRNA: 3'- cCCGCcUGcUGUGCGACGAGCuuaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 54282 | 0.69 | 0.645244 |
Target: 5'- -cGCGGGCGcuggaGCACGC-GCUCGGAc-- -3' miRNA: 3'- ccCGCCUGC-----UGUGCGaCGAGCUUaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 32764 | 0.69 | 0.645244 |
Target: 5'- cGGCGGcCGGCAgCGCgaaCUCGAagcGUUCg -3' miRNA: 3'- cCCGCCuGCUGU-GCGac-GAGCU---UAAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 46692 | 0.68 | 0.677882 |
Target: 5'- cGGGCGGGaucUGugGCGuCUGCggCGAGg-- -3' miRNA: 3'- -CCCGCCU---GCugUGC-GACGa-GCUUaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 24375 | 0.68 | 0.720749 |
Target: 5'- aGGGCGGcgaGCGuCGCGCcgauUGCUgCGAAg-- -3' miRNA: 3'- -CCCGCC---UGCuGUGCG----ACGA-GCUUaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 34535 | 0.68 | 0.720749 |
Target: 5'- uGGCGuuuuGACGACACGUUccaGCUCGGc--- -3' miRNA: 3'- cCCGC----CUGCUGUGCGA---CGAGCUuaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 32652 | 0.68 | 0.687611 |
Target: 5'- -cGCGGGCGAuCAgGuCUGCgaacgcuUCGAGUUCg -3' miRNA: 3'- ccCGCCUGCU-GUgC-GACG-------AGCUUAAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 60718 | 0.68 | 0.720749 |
Target: 5'- gGGGaUGGACGACGacaaggacCGCUgGCUCGGc--- -3' miRNA: 3'- -CCC-GCCUGCUGU--------GCGA-CGAGCUuaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 4561 | 0.68 | 0.717573 |
Target: 5'- -cGCGGcgcaucucgcgccaGCGGCgGCGCUGCUCGGGc-- -3' miRNA: 3'- ccCGCC--------------UGCUG-UGCGACGAGCUUaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 31354 | 0.68 | 0.710134 |
Target: 5'- -cGCGGACGACuGCGgCUGC-CGA--UCg -3' miRNA: 3'- ccCGCCUGCUG-UGC-GACGaGCUuaAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 24331 | 0.68 | 0.710134 |
Target: 5'- cGGCGcGAuCGACAUGCgGCUCuGcgUCg -3' miRNA: 3'- cCCGC-CU-GCUGUGCGaCGAGcUuaAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 5139 | 0.68 | 0.705866 |
Target: 5'- cGGGCGGcgcugauccugcuCGGCGCGCUGaUCGGu--- -3' miRNA: 3'- -CCCGCCu------------GCUGUGCGACgAGCUuaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 52708 | 0.68 | 0.687611 |
Target: 5'- cGGCcgacgccGGACGAggcCGCGCUGCUgaCGaAGUUCa -3' miRNA: 3'- cCCG-------CCUGCU---GUGCGACGA--GC-UUAAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 24155 | 0.67 | 0.731277 |
Target: 5'- uGGGCGGcaggagGCG-CACGCcUGCacguuccccggCGAGUUCa -3' miRNA: 3'- -CCCGCC------UGCuGUGCG-ACGa----------GCUUAAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 45011 | 0.67 | 0.752028 |
Target: 5'- cGGCGGACGccaACACGCgGCagauggCGAGc-- -3' miRNA: 3'- cCCGCCUGC---UGUGCGaCGa-----GCUUaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 45870 | 0.67 | 0.752028 |
Target: 5'- aGGCGGACGGCAUcacGCUCGugaUCc -3' miRNA: 3'- cCCGCCUGCUGUGcgaCGAGCuuaAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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