miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23997 5' -54.3 NC_005262.1 + 17755 1.13 0.00086
Target:  5'- cGGGCGGACGACACGCUGCUCGAAUUCg -3'
miRNA:   3'- -CCCGCCUGCUGUGCGACGAGCUUAAG- -5'
23997 5' -54.3 NC_005262.1 + 56641 0.79 0.178501
Target:  5'- uGGCGGAUGAugcgccccuCGCGCUGCUCGAc--- -3'
miRNA:   3'- cCCGCCUGCU---------GUGCGACGAGCUuaag -5'
23997 5' -54.3 NC_005262.1 + 2960 0.76 0.277954
Target:  5'- gGGGCGGGCacuCACGCUGCcCGGcaUCg -3'
miRNA:   3'- -CCCGCCUGcu-GUGCGACGaGCUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 51445 0.75 0.31461
Target:  5'- -cGCGGACGGCGCggugccgaGCUGCauggCGGAUUCg -3'
miRNA:   3'- ccCGCCUGCUGUG--------CGACGa---GCUUAAG- -5'
23997 5' -54.3 NC_005262.1 + 29739 0.75 0.31461
Target:  5'- gGGcGCGGGCGGCAUGCcGCUCGc---- -3'
miRNA:   3'- -CC-CGCCUGCUGUGCGaCGAGCuuaag -5'
23997 5' -54.3 NC_005262.1 + 56093 0.74 0.363268
Target:  5'- -cGCGG-UGAUGCGCUGCUCGAGcgccUUCu -3'
miRNA:   3'- ccCGCCuGCUGUGCGACGAGCUU----AAG- -5'
23997 5' -54.3 NC_005262.1 + 26556 0.73 0.416901
Target:  5'- -aGCGGcCGACGCGCUGCgCcAGUUCg -3'
miRNA:   3'- ccCGCCuGCUGUGCGACGaGcUUAAG- -5'
23997 5' -54.3 NC_005262.1 + 52362 0.73 0.416901
Target:  5'- aGGCGGACGGgACGCUGgaCGcGUa- -3'
miRNA:   3'- cCCGCCUGCUgUGCGACgaGCuUAag -5'
23997 5' -54.3 NC_005262.1 + 15153 0.73 0.426299
Target:  5'- aGGCGGguacaGCGAcCAUGcCUGCUCGAAcUCg -3'
miRNA:   3'- cCCGCC-----UGCU-GUGC-GACGAGCUUaAG- -5'
23997 5' -54.3 NC_005262.1 + 17732 0.72 0.445468
Target:  5'- uGGCGGGCGAUcucuGCcuGCUGCUCGGc--- -3'
miRNA:   3'- cCCGCCUGCUG----UG--CGACGAGCUuaag -5'
23997 5' -54.3 NC_005262.1 + 17420 0.72 0.465109
Target:  5'- uGGGCgccacgcuGGACGACcuGCGCUcGUUCGAGaUCa -3'
miRNA:   3'- -CCCG--------CCUGCUG--UGCGA-CGAGCUUaAG- -5'
23997 5' -54.3 NC_005262.1 + 45980 0.72 0.485191
Target:  5'- aGGGUugGGACGACAgcCGCgUGUUCGcGUUCc -3'
miRNA:   3'- -CCCG--CCUGCUGU--GCG-ACGAGCuUAAG- -5'
23997 5' -54.3 NC_005262.1 + 25996 0.71 0.505677
Target:  5'- uGGC-GACGuaccauGCGCGCUGCUCGGcaUCg -3'
miRNA:   3'- cCCGcCUGC------UGUGCGACGAGCUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 12947 0.71 0.516059
Target:  5'- aGGGCGugcgcGACGGCAuCGCcgaccGCUCGGcgUCg -3'
miRNA:   3'- -CCCGC-----CUGCUGU-GCGa----CGAGCUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 10911 0.71 0.526526
Target:  5'- cGGCGGACGcgcAUGCGCUGgUCGugaUCg -3'
miRNA:   3'- cCCGCCUGC---UGUGCGACgAGCuuaAG- -5'
23997 5' -54.3 NC_005262.1 + 1913 0.71 0.5339
Target:  5'- gGGGCGGAgggugcggguugcgUGGCuCGCUGgUCGuAAUUCu -3'
miRNA:   3'- -CCCGCCU--------------GCUGuGCGACgAGC-UUAAG- -5'
23997 5' -54.3 NC_005262.1 + 5075 0.71 0.536013
Target:  5'- cGGCGG-CGGCGCGUgcgaccgGCUCGGcggugcgcgcccgGUUCa -3'
miRNA:   3'- cCCGCCuGCUGUGCGa------CGAGCU-------------UAAG- -5'
23997 5' -54.3 NC_005262.1 + 19785 0.7 0.569112
Target:  5'- gGGGUGGugucgAUGACGCGCUGCggaacguaaUCGcuUUCa -3'
miRNA:   3'- -CCCGCC-----UGCUGUGCGACG---------AGCuuAAG- -5'
23997 5' -54.3 NC_005262.1 + 6993 0.7 0.589652
Target:  5'- -aGCGGAUgaaguggGGCACGCgGCUCGAAa-- -3'
miRNA:   3'- ccCGCCUG-------CUGUGCGaCGAGCUUaag -5'
23997 5' -54.3 NC_005262.1 + 32150 0.7 0.601605
Target:  5'- -aGCGGGCGGCACGUggaUCGAcUUCc -3'
miRNA:   3'- ccCGCCUGCUGUGCGacgAGCUuAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.