Results 41 - 56 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23997 | 5' | -54.3 | NC_005262.1 | + | 45011 | 0.67 | 0.752028 |
Target: 5'- cGGCGGACGccaACACGCgGCagauggCGAGc-- -3' miRNA: 3'- cCCGCCUGC---UGUGCGaCGa-----GCUUaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 45870 | 0.67 | 0.752028 |
Target: 5'- aGGCGGACGGCAUcacGCUCGugaUCc -3' miRNA: 3'- cCCGCCUGCUGUGcgaCGAGCuuaAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 61166 | 0.67 | 0.752028 |
Target: 5'- cGGCGGGCGagcugacggGCGCGCggcGCUaCGAGa-- -3' miRNA: 3'- cCCGCCUGC---------UGUGCGa--CGA-GCUUaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 24478 | 0.67 | 0.752028 |
Target: 5'- -cGCGGACGuGCGCGCcgccgGUUUGGcgUCg -3' miRNA: 3'- ccCGCCUGC-UGUGCGa----CGAGCUuaAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 6596 | 0.67 | 0.7723 |
Target: 5'- cGGCGaGGuCGGCGCGCUGaucgUCGAGc-- -3' miRNA: 3'- cCCGC-CU-GCUGUGCGACg---AGCUUaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 277 | 0.66 | 0.800658 |
Target: 5'- -uGCGGAucgucacCGGCACGCUGCUguaCGAc--- -3' miRNA: 3'- ccCGCCU-------GCUGUGCGACGA---GCUuaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 58595 | 0.66 | 0.801611 |
Target: 5'- aGGGCGGuCGACugGUucagGUUCGc---- -3' miRNA: 3'- -CCCGCCuGCUGugCGa---CGAGCuuaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 21431 | 0.66 | 0.811047 |
Target: 5'- cGGCcGACGucCGCgaGCUGgUCGAGUUCc -3' miRNA: 3'- cCCGcCUGCu-GUG--CGACgAGCUUAAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 21687 | 0.66 | 0.811047 |
Target: 5'- cGGCGG-CGcCGCGCUGCUguacgCGGGc-- -3' miRNA: 3'- cCCGCCuGCuGUGCGACGA-----GCUUaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 53047 | 0.66 | 0.811047 |
Target: 5'- cGGGCGuGgaguACGACGCGCUGaccggcgCGA--UCg -3' miRNA: 3'- -CCCGC-C----UGCUGUGCGACga-----GCUuaAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 60994 | 0.66 | 0.811047 |
Target: 5'- aGGCgucgaugaaGGACGACACGgUGCgcacggcCGAcUUCa -3' miRNA: 3'- cCCG---------CCUGCUGUGCgACGa------GCUuAAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 48492 | 0.66 | 0.817542 |
Target: 5'- cGGGCGGcgcgACGGCagccgcagguaacaGCGC-GCUCGAc--- -3' miRNA: 3'- -CCCGCC----UGCUG--------------UGCGaCGAGCUuaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 63357 | 0.66 | 0.820298 |
Target: 5'- aGGCGGAU--CAUGC-GCUCGAAg-- -3' miRNA: 3'- cCCGCCUGcuGUGCGaCGAGCUUaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 35719 | 0.66 | 0.829354 |
Target: 5'- cGGCgGGACGGcCACGCUGaucCUCGcAUg- -3' miRNA: 3'- cCCG-CCUGCU-GUGCGAC---GAGCuUAag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 58608 | 0.66 | 0.829354 |
Target: 5'- gGGGCGccuCGAUGCGCUgcaccgucagGCUCGGcagUCg -3' miRNA: 3'- -CCCGCcu-GCUGUGCGA----------CGAGCUua-AG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 63620 | 0.66 | 0.829354 |
Target: 5'- -cGCGGACGuACACGC-GCU-GAGUg- -3' miRNA: 3'- ccCGCCUGC-UGUGCGaCGAgCUUAag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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