miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23997 5' -54.3 NC_005262.1 + 60718 0.68 0.720749
Target:  5'- gGGGaUGGACGACGacaaggacCGCUgGCUCGGc--- -3'
miRNA:   3'- -CCC-GCCUGCUGU--------GCGA-CGAGCUuaag -5'
23997 5' -54.3 NC_005262.1 + 24375 0.68 0.720749
Target:  5'- aGGGCGGcgaGCGuCGCGCcgauUGCUgCGAAg-- -3'
miRNA:   3'- -CCCGCC---UGCuGUGCG----ACGA-GCUUaag -5'
23997 5' -54.3 NC_005262.1 + 4561 0.68 0.717573
Target:  5'- -cGCGGcgcaucucgcgccaGCGGCgGCGCUGCUCGGGc-- -3'
miRNA:   3'- ccCGCC--------------UGCUG-UGCGACGAGCUUaag -5'
23997 5' -54.3 NC_005262.1 + 31354 0.68 0.710134
Target:  5'- -cGCGGACGACuGCGgCUGC-CGA--UCg -3'
miRNA:   3'- ccCGCCUGCUG-UGC-GACGaGCUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 24331 0.68 0.710134
Target:  5'- cGGCGcGAuCGACAUGCgGCUCuGcgUCg -3'
miRNA:   3'- cCCGC-CU-GCUGUGCGaCGAGcUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 5139 0.68 0.705866
Target:  5'- cGGGCGGcgcugauccugcuCGGCGCGCUGaUCGGu--- -3'
miRNA:   3'- -CCCGCCu------------GCUGUGCGACgAGCUuaag -5'
23997 5' -54.3 NC_005262.1 + 32652 0.68 0.687611
Target:  5'- -cGCGGGCGAuCAgGuCUGCgaacgcuUCGAGUUCg -3'
miRNA:   3'- ccCGCCUGCU-GUgC-GACG-------AGCUUAAG- -5'
23997 5' -54.3 NC_005262.1 + 52708 0.68 0.687611
Target:  5'- cGGCcgacgccGGACGAggcCGCGCUGCUgaCGaAGUUCa -3'
miRNA:   3'- cCCG-------CCUGCU---GUGCGACGA--GC-UUAAG- -5'
23997 5' -54.3 NC_005262.1 + 46692 0.68 0.677882
Target:  5'- cGGGCGGGaucUGugGCGuCUGCggCGAGg-- -3'
miRNA:   3'- -CCCGCCU---GCugUGC-GACGa-GCUUaag -5'
23997 5' -54.3 NC_005262.1 + 47800 0.69 0.664857
Target:  5'- aGGCGGcgagccgccgccCGGCGCGgUGCUUGGcgUCa -3'
miRNA:   3'- cCCGCCu-----------GCUGUGCgACGAGCUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 32764 0.69 0.645244
Target:  5'- cGGCGGcCGGCAgCGCgaaCUCGAagcGUUCg -3'
miRNA:   3'- cCCGCCuGCUGU-GCGac-GAGCU---UAAG- -5'
23997 5' -54.3 NC_005262.1 + 20669 0.69 0.645244
Target:  5'- cGGCGcGCcGCGCGCUGCUCGc---- -3'
miRNA:   3'- cCCGCcUGcUGUGCGACGAGCuuaag -5'
23997 5' -54.3 NC_005262.1 + 54282 0.69 0.645244
Target:  5'- -cGCGGGCGcuggaGCACGC-GCUCGGAc-- -3'
miRNA:   3'- ccCGCCUGC-----UGUGCGaCGAGCUUaag -5'
23997 5' -54.3 NC_005262.1 + 35645 0.69 0.612499
Target:  5'- cGGCGGGCGAUggGCUaCUCGGu--- -3'
miRNA:   3'- cCCGCCUGCUGugCGAcGAGCUuaag -5'
23997 5' -54.3 NC_005262.1 + 30095 0.69 0.612499
Target:  5'- aGGGC-GACGACACGCcgGCcgccgCGAAg-- -3'
miRNA:   3'- -CCCGcCUGCUGUGCGa-CGa----GCUUaag -5'
23997 5' -54.3 NC_005262.1 + 49220 0.7 0.601605
Target:  5'- aGGGCGGccucgGCGGCGCGCaguccGCgcgCGAggUCc -3'
miRNA:   3'- -CCCGCC-----UGCUGUGCGa----CGa--GCUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 32150 0.7 0.601605
Target:  5'- -aGCGGGCGGCACGUggaUCGAcUUCc -3'
miRNA:   3'- ccCGCCUGCUGUGCGacgAGCUuAAG- -5'
23997 5' -54.3 NC_005262.1 + 6993 0.7 0.589652
Target:  5'- -aGCGGAUgaaguggGGCACGCgGCUCGAAa-- -3'
miRNA:   3'- ccCGCCUG-------CUGUGCGaCGAGCUUaag -5'
23997 5' -54.3 NC_005262.1 + 19785 0.7 0.569112
Target:  5'- gGGGUGGugucgAUGACGCGCUGCggaacguaaUCGcuUUCa -3'
miRNA:   3'- -CCCGCC-----UGCUGUGCGACG---------AGCuuAAG- -5'
23997 5' -54.3 NC_005262.1 + 5075 0.71 0.536013
Target:  5'- cGGCGG-CGGCGCGUgcgaccgGCUCGGcggugcgcgcccgGUUCa -3'
miRNA:   3'- cCCGCCuGCUGUGCGa------CGAGCU-------------UAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.