miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23997 5' -54.3 NC_005262.1 + 277 0.66 0.800658
Target:  5'- -uGCGGAucgucacCGGCACGCUGCUguaCGAc--- -3'
miRNA:   3'- ccCGCCU-------GCUGUGCGACGA---GCUuaag -5'
23997 5' -54.3 NC_005262.1 + 1913 0.71 0.5339
Target:  5'- gGGGCGGAgggugcggguugcgUGGCuCGCUGgUCGuAAUUCu -3'
miRNA:   3'- -CCCGCCU--------------GCUGuGCGACgAGC-UUAAG- -5'
23997 5' -54.3 NC_005262.1 + 2960 0.76 0.277954
Target:  5'- gGGGCGGGCacuCACGCUGCcCGGcaUCg -3'
miRNA:   3'- -CCCGCCUGcu-GUGCGACGaGCUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 4561 0.68 0.717573
Target:  5'- -cGCGGcgcaucucgcgccaGCGGCgGCGCUGCUCGGGc-- -3'
miRNA:   3'- ccCGCC--------------UGCUG-UGCGACGAGCUUaag -5'
23997 5' -54.3 NC_005262.1 + 5075 0.71 0.536013
Target:  5'- cGGCGG-CGGCGCGUgcgaccgGCUCGGcggugcgcgcccgGUUCa -3'
miRNA:   3'- cCCGCCuGCUGUGCGa------CGAGCU-------------UAAG- -5'
23997 5' -54.3 NC_005262.1 + 5139 0.68 0.705866
Target:  5'- cGGGCGGcgcugauccugcuCGGCGCGCUGaUCGGu--- -3'
miRNA:   3'- -CCCGCCu------------GCUGUGCGACgAGCUuaag -5'
23997 5' -54.3 NC_005262.1 + 6596 0.67 0.7723
Target:  5'- cGGCGaGGuCGGCGCGCUGaucgUCGAGc-- -3'
miRNA:   3'- cCCGC-CU-GCUGUGCGACg---AGCUUaag -5'
23997 5' -54.3 NC_005262.1 + 6993 0.7 0.589652
Target:  5'- -aGCGGAUgaaguggGGCACGCgGCUCGAAa-- -3'
miRNA:   3'- ccCGCCUG-------CUGUGCGaCGAGCUUaag -5'
23997 5' -54.3 NC_005262.1 + 10911 0.71 0.526526
Target:  5'- cGGCGGACGcgcAUGCGCUGgUCGugaUCg -3'
miRNA:   3'- cCCGCCUGC---UGUGCGACgAGCuuaAG- -5'
23997 5' -54.3 NC_005262.1 + 12947 0.71 0.516059
Target:  5'- aGGGCGugcgcGACGGCAuCGCcgaccGCUCGGcgUCg -3'
miRNA:   3'- -CCCGC-----CUGCUGU-GCGa----CGAGCUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 15153 0.73 0.426299
Target:  5'- aGGCGGguacaGCGAcCAUGcCUGCUCGAAcUCg -3'
miRNA:   3'- cCCGCC-----UGCU-GUGC-GACGAGCUUaAG- -5'
23997 5' -54.3 NC_005262.1 + 17420 0.72 0.465109
Target:  5'- uGGGCgccacgcuGGACGACcuGCGCUcGUUCGAGaUCa -3'
miRNA:   3'- -CCCG--------CCUGCUG--UGCGA-CGAGCUUaAG- -5'
23997 5' -54.3 NC_005262.1 + 17732 0.72 0.445468
Target:  5'- uGGCGGGCGAUcucuGCcuGCUGCUCGGc--- -3'
miRNA:   3'- cCCGCCUGCUG----UG--CGACGAGCUuaag -5'
23997 5' -54.3 NC_005262.1 + 17755 1.13 0.00086
Target:  5'- cGGGCGGACGACACGCUGCUCGAAUUCg -3'
miRNA:   3'- -CCCGCCUGCUGUGCGACGAGCUUAAG- -5'
23997 5' -54.3 NC_005262.1 + 19785 0.7 0.569112
Target:  5'- gGGGUGGugucgAUGACGCGCUGCggaacguaaUCGcuUUCa -3'
miRNA:   3'- -CCCGCC-----UGCUGUGCGACG---------AGCuuAAG- -5'
23997 5' -54.3 NC_005262.1 + 20669 0.69 0.645244
Target:  5'- cGGCGcGCcGCGCGCUGCUCGc---- -3'
miRNA:   3'- cCCGCcUGcUGUGCGACGAGCuuaag -5'
23997 5' -54.3 NC_005262.1 + 21431 0.66 0.811047
Target:  5'- cGGCcGACGucCGCgaGCUGgUCGAGUUCc -3'
miRNA:   3'- cCCGcCUGCu-GUG--CGACgAGCUUAAG- -5'
23997 5' -54.3 NC_005262.1 + 21687 0.66 0.811047
Target:  5'- cGGCGG-CGcCGCGCUGCUguacgCGGGc-- -3'
miRNA:   3'- cCCGCCuGCuGUGCGACGA-----GCUUaag -5'
23997 5' -54.3 NC_005262.1 + 23925 0.67 0.741707
Target:  5'- aGGGCGGcgugcCGGCcuACGUUGC-CGAGUa- -3'
miRNA:   3'- -CCCGCCu----GCUG--UGCGACGaGCUUAag -5'
23997 5' -54.3 NC_005262.1 + 24155 0.67 0.731277
Target:  5'- uGGGCGGcaggagGCG-CACGCcUGCacguuccccggCGAGUUCa -3'
miRNA:   3'- -CCCGCC------UGCuGUGCG-ACGa----------GCUUAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.