miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23997 5' -54.3 NC_005262.1 + 24331 0.68 0.710134
Target:  5'- cGGCGcGAuCGACAUGCgGCUCuGcgUCg -3'
miRNA:   3'- cCCGC-CU-GCUGUGCGaCGAGcUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 24375 0.68 0.720749
Target:  5'- aGGGCGGcgaGCGuCGCGCcgauUGCUgCGAAg-- -3'
miRNA:   3'- -CCCGCC---UGCuGUGCG----ACGA-GCUUaag -5'
23997 5' -54.3 NC_005262.1 + 24478 0.67 0.752028
Target:  5'- -cGCGGACGuGCGCGCcgccgGUUUGGcgUCg -3'
miRNA:   3'- ccCGCCUGC-UGUGCGa----CGAGCUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 25996 0.71 0.505677
Target:  5'- uGGC-GACGuaccauGCGCGCUGCUCGGcaUCg -3'
miRNA:   3'- cCCGcCUGC------UGUGCGACGAGCUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 26556 0.73 0.416901
Target:  5'- -aGCGGcCGACGCGCUGCgCcAGUUCg -3'
miRNA:   3'- ccCGCCuGCUGUGCGACGaGcUUAAG- -5'
23997 5' -54.3 NC_005262.1 + 29739 0.75 0.31461
Target:  5'- gGGcGCGGGCGGCAUGCcGCUCGc---- -3'
miRNA:   3'- -CC-CGCCUGCUGUGCGaCGAGCuuaag -5'
23997 5' -54.3 NC_005262.1 + 30095 0.69 0.612499
Target:  5'- aGGGC-GACGACACGCcgGCcgccgCGAAg-- -3'
miRNA:   3'- -CCCGcCUGCUGUGCGa-CGa----GCUUaag -5'
23997 5' -54.3 NC_005262.1 + 31354 0.68 0.710134
Target:  5'- -cGCGGACGACuGCGgCUGC-CGA--UCg -3'
miRNA:   3'- ccCGCCUGCUG-UGC-GACGaGCUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 32150 0.7 0.601605
Target:  5'- -aGCGGGCGGCACGUggaUCGAcUUCc -3'
miRNA:   3'- ccCGCCUGCUGUGCGacgAGCUuAAG- -5'
23997 5' -54.3 NC_005262.1 + 32652 0.68 0.687611
Target:  5'- -cGCGGGCGAuCAgGuCUGCgaacgcuUCGAGUUCg -3'
miRNA:   3'- ccCGCCUGCU-GUgC-GACG-------AGCUUAAG- -5'
23997 5' -54.3 NC_005262.1 + 32764 0.69 0.645244
Target:  5'- cGGCGGcCGGCAgCGCgaaCUCGAagcGUUCg -3'
miRNA:   3'- cCCGCCuGCUGU-GCGac-GAGCU---UAAG- -5'
23997 5' -54.3 NC_005262.1 + 34220 0.67 0.731277
Target:  5'- cGGCuucGGGCGACACGCUcgacaugggcGC-CGAGUa- -3'
miRNA:   3'- cCCG---CCUGCUGUGCGA----------CGaGCUUAag -5'
23997 5' -54.3 NC_005262.1 + 34535 0.68 0.720749
Target:  5'- uGGCGuuuuGACGACACGUUccaGCUCGGc--- -3'
miRNA:   3'- cCCGC----CUGCUGUGCGA---CGAGCUuaag -5'
23997 5' -54.3 NC_005262.1 + 35645 0.69 0.612499
Target:  5'- cGGCGGGCGAUggGCUaCUCGGu--- -3'
miRNA:   3'- cCCGCCUGCUGugCGAcGAGCUuaag -5'
23997 5' -54.3 NC_005262.1 + 35719 0.66 0.829354
Target:  5'- cGGCgGGACGGcCACGCUGaucCUCGcAUg- -3'
miRNA:   3'- cCCG-CCUGCU-GUGCGAC---GAGCuUAag -5'
23997 5' -54.3 NC_005262.1 + 45011 0.67 0.752028
Target:  5'- cGGCGGACGccaACACGCgGCagauggCGAGc-- -3'
miRNA:   3'- cCCGCCUGC---UGUGCGaCGa-----GCUUaag -5'
23997 5' -54.3 NC_005262.1 + 45870 0.67 0.752028
Target:  5'- aGGCGGACGGCAUcacGCUCGugaUCc -3'
miRNA:   3'- cCCGCCUGCUGUGcgaCGAGCuuaAG- -5'
23997 5' -54.3 NC_005262.1 + 45980 0.72 0.485191
Target:  5'- aGGGUugGGACGACAgcCGCgUGUUCGcGUUCc -3'
miRNA:   3'- -CCCG--CCUGCUGU--GCG-ACGAGCuUAAG- -5'
23997 5' -54.3 NC_005262.1 + 46692 0.68 0.677882
Target:  5'- cGGGCGGGaucUGugGCGuCUGCggCGAGg-- -3'
miRNA:   3'- -CCCGCCU---GCugUGC-GACGa-GCUUaag -5'
23997 5' -54.3 NC_005262.1 + 47800 0.69 0.664857
Target:  5'- aGGCGGcgagccgccgccCGGCGCGgUGCUUGGcgUCa -3'
miRNA:   3'- cCCGCCu-----------GCUGUGCgACGAGCUuaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.