Results 41 - 56 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23997 | 5' | -54.3 | NC_005262.1 | + | 48492 | 0.66 | 0.817542 |
Target: 5'- cGGGCGGcgcgACGGCagccgcagguaacaGCGC-GCUCGAc--- -3' miRNA: 3'- -CCCGCC----UGCUG--------------UGCGaCGAGCUuaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 49220 | 0.7 | 0.601605 |
Target: 5'- aGGGCGGccucgGCGGCGCGCaguccGCgcgCGAggUCc -3' miRNA: 3'- -CCCGCC-----UGCUGUGCGa----CGa--GCUuaAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 51445 | 0.75 | 0.31461 |
Target: 5'- -cGCGGACGGCGCggugccgaGCUGCauggCGGAUUCg -3' miRNA: 3'- ccCGCCUGCUGUG--------CGACGa---GCUUAAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 52362 | 0.73 | 0.416901 |
Target: 5'- aGGCGGACGGgACGCUGgaCGcGUa- -3' miRNA: 3'- cCCGCCUGCUgUGCGACgaGCuUAag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 52708 | 0.68 | 0.687611 |
Target: 5'- cGGCcgacgccGGACGAggcCGCGCUGCUgaCGaAGUUCa -3' miRNA: 3'- cCCG-------CCUGCU---GUGCGACGA--GC-UUAAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 53047 | 0.66 | 0.811047 |
Target: 5'- cGGGCGuGgaguACGACGCGCUGaccggcgCGA--UCg -3' miRNA: 3'- -CCCGC-C----UGCUGUGCGACga-----GCUuaAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 54282 | 0.69 | 0.645244 |
Target: 5'- -cGCGGGCGcuggaGCACGC-GCUCGGAc-- -3' miRNA: 3'- ccCGCCUGC-----UGUGCGaCGAGCUUaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 56093 | 0.74 | 0.363268 |
Target: 5'- -cGCGG-UGAUGCGCUGCUCGAGcgccUUCu -3' miRNA: 3'- ccCGCCuGCUGUGCGACGAGCUU----AAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 56641 | 0.79 | 0.178501 |
Target: 5'- uGGCGGAUGAugcgccccuCGCGCUGCUCGAc--- -3' miRNA: 3'- cCCGCCUGCU---------GUGCGACGAGCUuaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 58595 | 0.66 | 0.801611 |
Target: 5'- aGGGCGGuCGACugGUucagGUUCGc---- -3' miRNA: 3'- -CCCGCCuGCUGugCGa---CGAGCuuaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 58608 | 0.66 | 0.829354 |
Target: 5'- gGGGCGccuCGAUGCGCUgcaccgucagGCUCGGcagUCg -3' miRNA: 3'- -CCCGCcu-GCUGUGCGA----------CGAGCUua-AG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 60718 | 0.68 | 0.720749 |
Target: 5'- gGGGaUGGACGACGacaaggacCGCUgGCUCGGc--- -3' miRNA: 3'- -CCC-GCCUGCUGU--------GCGA-CGAGCUuaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 60994 | 0.66 | 0.811047 |
Target: 5'- aGGCgucgaugaaGGACGACACGgUGCgcacggcCGAcUUCa -3' miRNA: 3'- cCCG---------CCUGCUGUGCgACGa------GCUuAAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 61166 | 0.67 | 0.752028 |
Target: 5'- cGGCGGGCGagcugacggGCGCGCggcGCUaCGAGa-- -3' miRNA: 3'- cCCGCCUGC---------UGUGCGa--CGA-GCUUaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 63357 | 0.66 | 0.820298 |
Target: 5'- aGGCGGAU--CAUGC-GCUCGAAg-- -3' miRNA: 3'- cCCGCCUGcuGUGCGaCGAGCUUaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 63620 | 0.66 | 0.829354 |
Target: 5'- -cGCGGACGuACACGC-GCU-GAGUg- -3' miRNA: 3'- ccCGCCUGC-UGUGCGaCGAgCUUAag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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