miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23997 5' -54.3 NC_005262.1 + 63620 0.66 0.829354
Target:  5'- -cGCGGACGuACACGC-GCU-GAGUg- -3'
miRNA:   3'- ccCGCCUGC-UGUGCGaCGAgCUUAag -5'
23997 5' -54.3 NC_005262.1 + 63357 0.66 0.820298
Target:  5'- aGGCGGAU--CAUGC-GCUCGAAg-- -3'
miRNA:   3'- cCCGCCUGcuGUGCGaCGAGCUUaag -5'
23997 5' -54.3 NC_005262.1 + 61166 0.67 0.752028
Target:  5'- cGGCGGGCGagcugacggGCGCGCggcGCUaCGAGa-- -3'
miRNA:   3'- cCCGCCUGC---------UGUGCGa--CGA-GCUUaag -5'
23997 5' -54.3 NC_005262.1 + 60994 0.66 0.811047
Target:  5'- aGGCgucgaugaaGGACGACACGgUGCgcacggcCGAcUUCa -3'
miRNA:   3'- cCCG---------CCUGCUGUGCgACGa------GCUuAAG- -5'
23997 5' -54.3 NC_005262.1 + 60718 0.68 0.720749
Target:  5'- gGGGaUGGACGACGacaaggacCGCUgGCUCGGc--- -3'
miRNA:   3'- -CCC-GCCUGCUGU--------GCGA-CGAGCUuaag -5'
23997 5' -54.3 NC_005262.1 + 58608 0.66 0.829354
Target:  5'- gGGGCGccuCGAUGCGCUgcaccgucagGCUCGGcagUCg -3'
miRNA:   3'- -CCCGCcu-GCUGUGCGA----------CGAGCUua-AG- -5'
23997 5' -54.3 NC_005262.1 + 58595 0.66 0.801611
Target:  5'- aGGGCGGuCGACugGUucagGUUCGc---- -3'
miRNA:   3'- -CCCGCCuGCUGugCGa---CGAGCuuaag -5'
23997 5' -54.3 NC_005262.1 + 56641 0.79 0.178501
Target:  5'- uGGCGGAUGAugcgccccuCGCGCUGCUCGAc--- -3'
miRNA:   3'- cCCGCCUGCU---------GUGCGACGAGCUuaag -5'
23997 5' -54.3 NC_005262.1 + 56093 0.74 0.363268
Target:  5'- -cGCGG-UGAUGCGCUGCUCGAGcgccUUCu -3'
miRNA:   3'- ccCGCCuGCUGUGCGACGAGCUU----AAG- -5'
23997 5' -54.3 NC_005262.1 + 54282 0.69 0.645244
Target:  5'- -cGCGGGCGcuggaGCACGC-GCUCGGAc-- -3'
miRNA:   3'- ccCGCCUGC-----UGUGCGaCGAGCUUaag -5'
23997 5' -54.3 NC_005262.1 + 53047 0.66 0.811047
Target:  5'- cGGGCGuGgaguACGACGCGCUGaccggcgCGA--UCg -3'
miRNA:   3'- -CCCGC-C----UGCUGUGCGACga-----GCUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 52708 0.68 0.687611
Target:  5'- cGGCcgacgccGGACGAggcCGCGCUGCUgaCGaAGUUCa -3'
miRNA:   3'- cCCG-------CCUGCU---GUGCGACGA--GC-UUAAG- -5'
23997 5' -54.3 NC_005262.1 + 52362 0.73 0.416901
Target:  5'- aGGCGGACGGgACGCUGgaCGcGUa- -3'
miRNA:   3'- cCCGCCUGCUgUGCGACgaGCuUAag -5'
23997 5' -54.3 NC_005262.1 + 51445 0.75 0.31461
Target:  5'- -cGCGGACGGCGCggugccgaGCUGCauggCGGAUUCg -3'
miRNA:   3'- ccCGCCUGCUGUG--------CGACGa---GCUUAAG- -5'
23997 5' -54.3 NC_005262.1 + 49220 0.7 0.601605
Target:  5'- aGGGCGGccucgGCGGCGCGCaguccGCgcgCGAggUCc -3'
miRNA:   3'- -CCCGCC-----UGCUGUGCGa----CGa--GCUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 48492 0.66 0.817542
Target:  5'- cGGGCGGcgcgACGGCagccgcagguaacaGCGC-GCUCGAc--- -3'
miRNA:   3'- -CCCGCC----UGCUG--------------UGCGaCGAGCUuaag -5'
23997 5' -54.3 NC_005262.1 + 47800 0.69 0.664857
Target:  5'- aGGCGGcgagccgccgccCGGCGCGgUGCUUGGcgUCa -3'
miRNA:   3'- cCCGCCu-----------GCUGUGCgACGAGCUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 46692 0.68 0.677882
Target:  5'- cGGGCGGGaucUGugGCGuCUGCggCGAGg-- -3'
miRNA:   3'- -CCCGCCU---GCugUGC-GACGa-GCUUaag -5'
23997 5' -54.3 NC_005262.1 + 45980 0.72 0.485191
Target:  5'- aGGGUugGGACGACAgcCGCgUGUUCGcGUUCc -3'
miRNA:   3'- -CCCG--CCUGCUGU--GCG-ACGAGCuUAAG- -5'
23997 5' -54.3 NC_005262.1 + 45870 0.67 0.752028
Target:  5'- aGGCGGACGGCAUcacGCUCGugaUCc -3'
miRNA:   3'- cCCGCCUGCUGUGcgaCGAGCuuaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.