Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23997 | 5' | -54.3 | NC_005262.1 | + | 45011 | 0.67 | 0.752028 |
Target: 5'- cGGCGGACGccaACACGCgGCagauggCGAGc-- -3' miRNA: 3'- cCCGCCUGC---UGUGCGaCGa-----GCUUaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 35719 | 0.66 | 0.829354 |
Target: 5'- cGGCgGGACGGcCACGCUGaucCUCGcAUg- -3' miRNA: 3'- cCCG-CCUGCU-GUGCGAC---GAGCuUAag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 35645 | 0.69 | 0.612499 |
Target: 5'- cGGCGGGCGAUggGCUaCUCGGu--- -3' miRNA: 3'- cCCGCCUGCUGugCGAcGAGCUuaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 34535 | 0.68 | 0.720749 |
Target: 5'- uGGCGuuuuGACGACACGUUccaGCUCGGc--- -3' miRNA: 3'- cCCGC----CUGCUGUGCGA---CGAGCUuaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 34220 | 0.67 | 0.731277 |
Target: 5'- cGGCuucGGGCGACACGCUcgacaugggcGC-CGAGUa- -3' miRNA: 3'- cCCG---CCUGCUGUGCGA----------CGaGCUUAag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 32764 | 0.69 | 0.645244 |
Target: 5'- cGGCGGcCGGCAgCGCgaaCUCGAagcGUUCg -3' miRNA: 3'- cCCGCCuGCUGU-GCGac-GAGCU---UAAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 32652 | 0.68 | 0.687611 |
Target: 5'- -cGCGGGCGAuCAgGuCUGCgaacgcuUCGAGUUCg -3' miRNA: 3'- ccCGCCUGCU-GUgC-GACG-------AGCUUAAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 32150 | 0.7 | 0.601605 |
Target: 5'- -aGCGGGCGGCACGUggaUCGAcUUCc -3' miRNA: 3'- ccCGCCUGCUGUGCGacgAGCUuAAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 31354 | 0.68 | 0.710134 |
Target: 5'- -cGCGGACGACuGCGgCUGC-CGA--UCg -3' miRNA: 3'- ccCGCCUGCUG-UGC-GACGaGCUuaAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 30095 | 0.69 | 0.612499 |
Target: 5'- aGGGC-GACGACACGCcgGCcgccgCGAAg-- -3' miRNA: 3'- -CCCGcCUGCUGUGCGa-CGa----GCUUaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 29739 | 0.75 | 0.31461 |
Target: 5'- gGGcGCGGGCGGCAUGCcGCUCGc---- -3' miRNA: 3'- -CC-CGCCUGCUGUGCGaCGAGCuuaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 26556 | 0.73 | 0.416901 |
Target: 5'- -aGCGGcCGACGCGCUGCgCcAGUUCg -3' miRNA: 3'- ccCGCCuGCUGUGCGACGaGcUUAAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 25996 | 0.71 | 0.505677 |
Target: 5'- uGGC-GACGuaccauGCGCGCUGCUCGGcaUCg -3' miRNA: 3'- cCCGcCUGC------UGUGCGACGAGCUuaAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 24478 | 0.67 | 0.752028 |
Target: 5'- -cGCGGACGuGCGCGCcgccgGUUUGGcgUCg -3' miRNA: 3'- ccCGCCUGC-UGUGCGa----CGAGCUuaAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 24375 | 0.68 | 0.720749 |
Target: 5'- aGGGCGGcgaGCGuCGCGCcgauUGCUgCGAAg-- -3' miRNA: 3'- -CCCGCC---UGCuGUGCG----ACGA-GCUUaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 24331 | 0.68 | 0.710134 |
Target: 5'- cGGCGcGAuCGACAUGCgGCUCuGcgUCg -3' miRNA: 3'- cCCGC-CU-GCUGUGCGaCGAGcUuaAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 24155 | 0.67 | 0.731277 |
Target: 5'- uGGGCGGcaggagGCG-CACGCcUGCacguuccccggCGAGUUCa -3' miRNA: 3'- -CCCGCC------UGCuGUGCG-ACGa----------GCUUAAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 23925 | 0.67 | 0.741707 |
Target: 5'- aGGGCGGcgugcCGGCcuACGUUGC-CGAGUa- -3' miRNA: 3'- -CCCGCCu----GCUG--UGCGACGaGCUUAag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 21687 | 0.66 | 0.811047 |
Target: 5'- cGGCGG-CGcCGCGCUGCUguacgCGGGc-- -3' miRNA: 3'- cCCGCCuGCuGUGCGACGA-----GCUUaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 21431 | 0.66 | 0.811047 |
Target: 5'- cGGCcGACGucCGCgaGCUGgUCGAGUUCc -3' miRNA: 3'- cCCGcCUGCu-GUG--CGACgAGCUUAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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