miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23997 5' -54.3 NC_005262.1 + 24155 0.67 0.731277
Target:  5'- uGGGCGGcaggagGCG-CACGCcUGCacguuccccggCGAGUUCa -3'
miRNA:   3'- -CCCGCC------UGCuGUGCG-ACGa----------GCUUAAG- -5'
23997 5' -54.3 NC_005262.1 + 35645 0.69 0.612499
Target:  5'- cGGCGGGCGAUggGCUaCUCGGu--- -3'
miRNA:   3'- cCCGCCUGCUGugCGAcGAGCUuaag -5'
23997 5' -54.3 NC_005262.1 + 32652 0.68 0.687611
Target:  5'- -cGCGGGCGAuCAgGuCUGCgaacgcuUCGAGUUCg -3'
miRNA:   3'- ccCGCCUGCU-GUgC-GACG-------AGCUUAAG- -5'
23997 5' -54.3 NC_005262.1 + 52708 0.68 0.687611
Target:  5'- cGGCcgacgccGGACGAggcCGCGCUGCUgaCGaAGUUCa -3'
miRNA:   3'- cCCG-------CCUGCU---GUGCGACGA--GC-UUAAG- -5'
23997 5' -54.3 NC_005262.1 + 5139 0.68 0.705866
Target:  5'- cGGGCGGcgcugauccugcuCGGCGCGCUGaUCGGu--- -3'
miRNA:   3'- -CCCGCCu------------GCUGUGCGACgAGCUuaag -5'
23997 5' -54.3 NC_005262.1 + 24331 0.68 0.710134
Target:  5'- cGGCGcGAuCGACAUGCgGCUCuGcgUCg -3'
miRNA:   3'- cCCGC-CU-GCUGUGCGaCGAGcUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 4561 0.68 0.717573
Target:  5'- -cGCGGcgcaucucgcgccaGCGGCgGCGCUGCUCGGGc-- -3'
miRNA:   3'- ccCGCC--------------UGCUG-UGCGACGAGCUUaag -5'
23997 5' -54.3 NC_005262.1 + 60718 0.68 0.720749
Target:  5'- gGGGaUGGACGACGacaaggacCGCUgGCUCGGc--- -3'
miRNA:   3'- -CCC-GCCUGCUGU--------GCGA-CGAGCUuaag -5'
23997 5' -54.3 NC_005262.1 + 34535 0.68 0.720749
Target:  5'- uGGCGuuuuGACGACACGUUccaGCUCGGc--- -3'
miRNA:   3'- cCCGC----CUGCUGUGCGA---CGAGCUuaag -5'
23997 5' -54.3 NC_005262.1 + 30095 0.69 0.612499
Target:  5'- aGGGC-GACGACACGCcgGCcgccgCGAAg-- -3'
miRNA:   3'- -CCCGcCUGCUGUGCGa-CGa----GCUUaag -5'
23997 5' -54.3 NC_005262.1 + 49220 0.7 0.601605
Target:  5'- aGGGCGGccucgGCGGCGCGCaguccGCgcgCGAggUCc -3'
miRNA:   3'- -CCCGCC-----UGCUGUGCGa----CGa--GCUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 32150 0.7 0.601605
Target:  5'- -aGCGGGCGGCACGUggaUCGAcUUCc -3'
miRNA:   3'- ccCGCCUGCUGUGCGacgAGCUuAAG- -5'
23997 5' -54.3 NC_005262.1 + 2960 0.76 0.277954
Target:  5'- gGGGCGGGCacuCACGCUGCcCGGcaUCg -3'
miRNA:   3'- -CCCGCCUGcu-GUGCGACGaGCUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 26556 0.73 0.416901
Target:  5'- -aGCGGcCGACGCGCUGCgCcAGUUCg -3'
miRNA:   3'- ccCGCCuGCUGUGCGACGaGcUUAAG- -5'
23997 5' -54.3 NC_005262.1 + 52362 0.73 0.416901
Target:  5'- aGGCGGACGGgACGCUGgaCGcGUa- -3'
miRNA:   3'- cCCGCCUGCUgUGCGACgaGCuUAag -5'
23997 5' -54.3 NC_005262.1 + 17420 0.72 0.465109
Target:  5'- uGGGCgccacgcuGGACGACcuGCGCUcGUUCGAGaUCa -3'
miRNA:   3'- -CCCG--------CCUGCUG--UGCGA-CGAGCUUaAG- -5'
23997 5' -54.3 NC_005262.1 + 45980 0.72 0.485191
Target:  5'- aGGGUugGGACGACAgcCGCgUGUUCGcGUUCc -3'
miRNA:   3'- -CCCG--CCUGCUGU--GCG-ACGAGCuUAAG- -5'
23997 5' -54.3 NC_005262.1 + 12947 0.71 0.516059
Target:  5'- aGGGCGugcgcGACGGCAuCGCcgaccGCUCGGcgUCg -3'
miRNA:   3'- -CCCGC-----CUGCUGU-GCGa----CGAGCUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 1913 0.71 0.5339
Target:  5'- gGGGCGGAgggugcggguugcgUGGCuCGCUGgUCGuAAUUCu -3'
miRNA:   3'- -CCCGCCU--------------GCUGuGCGACgAGC-UUAAG- -5'
23997 5' -54.3 NC_005262.1 + 5075 0.71 0.536013
Target:  5'- cGGCGG-CGGCGCGUgcgaccgGCUCGGcggugcgcgcccgGUUCa -3'
miRNA:   3'- cCCGCCuGCUGUGCGa------CGAGCU-------------UAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.