miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23997 5' -54.3 NC_005262.1 + 52362 0.73 0.416901
Target:  5'- aGGCGGACGGgACGCUGgaCGcGUa- -3'
miRNA:   3'- cCCGCCUGCUgUGCGACgaGCuUAag -5'
23997 5' -54.3 NC_005262.1 + 17420 0.72 0.465109
Target:  5'- uGGGCgccacgcuGGACGACcuGCGCUcGUUCGAGaUCa -3'
miRNA:   3'- -CCCG--------CCUGCUG--UGCGA-CGAGCUUaAG- -5'
23997 5' -54.3 NC_005262.1 + 45980 0.72 0.485191
Target:  5'- aGGGUugGGACGACAgcCGCgUGUUCGcGUUCc -3'
miRNA:   3'- -CCCG--CCUGCUGU--GCG-ACGAGCuUAAG- -5'
23997 5' -54.3 NC_005262.1 + 12947 0.71 0.516059
Target:  5'- aGGGCGugcgcGACGGCAuCGCcgaccGCUCGGcgUCg -3'
miRNA:   3'- -CCCGC-----CUGCUGU-GCGa----CGAGCUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 1913 0.71 0.5339
Target:  5'- gGGGCGGAgggugcggguugcgUGGCuCGCUGgUCGuAAUUCu -3'
miRNA:   3'- -CCCGCCU--------------GCUGuGCGACgAGC-UUAAG- -5'
23997 5' -54.3 NC_005262.1 + 5075 0.71 0.536013
Target:  5'- cGGCGG-CGGCGCGUgcgaccgGCUCGGcggugcgcgcccgGUUCa -3'
miRNA:   3'- cCCGCCuGCUGUGCGa------CGAGCU-------------UAAG- -5'
23997 5' -54.3 NC_005262.1 + 52708 0.68 0.687611
Target:  5'- cGGCcgacgccGGACGAggcCGCGCUGCUgaCGaAGUUCa -3'
miRNA:   3'- cCCG-------CCUGCU---GUGCGACGA--GC-UUAAG- -5'
23997 5' -54.3 NC_005262.1 + 32652 0.68 0.687611
Target:  5'- -cGCGGGCGAuCAgGuCUGCgaacgcuUCGAGUUCg -3'
miRNA:   3'- ccCGCCUGCU-GUgC-GACG-------AGCUUAAG- -5'
23997 5' -54.3 NC_005262.1 + 35645 0.69 0.612499
Target:  5'- cGGCGGGCGAUggGCUaCUCGGu--- -3'
miRNA:   3'- cCCGCCUGCUGugCGAcGAGCUuaag -5'
23997 5' -54.3 NC_005262.1 + 30095 0.69 0.612499
Target:  5'- aGGGC-GACGACACGCcgGCcgccgCGAAg-- -3'
miRNA:   3'- -CCCGcCUGCUGUGCGa-CGa----GCUUaag -5'
23997 5' -54.3 NC_005262.1 + 49220 0.7 0.601605
Target:  5'- aGGGCGGccucgGCGGCGCGCaguccGCgcgCGAggUCc -3'
miRNA:   3'- -CCCGCC-----UGCUGUGCGa----CGa--GCUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 32150 0.7 0.601605
Target:  5'- -aGCGGGCGGCACGUggaUCGAcUUCc -3'
miRNA:   3'- ccCGCCUGCUGUGCGacgAGCUuAAG- -5'
23997 5' -54.3 NC_005262.1 + 24375 0.68 0.720749
Target:  5'- aGGGCGGcgaGCGuCGCGCcgauUGCUgCGAAg-- -3'
miRNA:   3'- -CCCGCC---UGCuGUGCG----ACGA-GCUUaag -5'
23997 5' -54.3 NC_005262.1 + 23925 0.67 0.741707
Target:  5'- aGGGCGGcgugcCGGCcuACGUUGC-CGAGUa- -3'
miRNA:   3'- -CCCGCCu----GCUG--UGCGACGaGCUUAag -5'
23997 5' -54.3 NC_005262.1 + 24478 0.67 0.752028
Target:  5'- -cGCGGACGuGCGCGCcgccgGUUUGGcgUCg -3'
miRNA:   3'- ccCGCCUGC-UGUGCGa----CGAGCUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 6596 0.67 0.7723
Target:  5'- cGGCGaGGuCGGCGCGCUGaucgUCGAGc-- -3'
miRNA:   3'- cCCGC-CU-GCUGUGCGACg---AGCUUaag -5'
23997 5' -54.3 NC_005262.1 + 277 0.66 0.800658
Target:  5'- -uGCGGAucgucacCGGCACGCUGCUguaCGAc--- -3'
miRNA:   3'- ccCGCCU-------GCUGUGCGACGA---GCUuaag -5'
23997 5' -54.3 NC_005262.1 + 58595 0.66 0.801611
Target:  5'- aGGGCGGuCGACugGUucagGUUCGc---- -3'
miRNA:   3'- -CCCGCCuGCUGugCGa---CGAGCuuaag -5'
23997 5' -54.3 NC_005262.1 + 60994 0.66 0.811047
Target:  5'- aGGCgucgaugaaGGACGACACGgUGCgcacggcCGAcUUCa -3'
miRNA:   3'- cCCG---------CCUGCUGUGCgACGa------GCUuAAG- -5'
23997 5' -54.3 NC_005262.1 + 56641 0.79 0.178501
Target:  5'- uGGCGGAUGAugcgccccuCGCGCUGCUCGAc--- -3'
miRNA:   3'- cCCGCCUGCU---------GUGCGACGAGCUuaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.