Results 41 - 56 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23997 | 5' | -54.3 | NC_005262.1 | + | 51445 | 0.75 | 0.31461 |
Target: 5'- -cGCGGACGGCGCggugccgaGCUGCauggCGGAUUCg -3' miRNA: 3'- ccCGCCUGCUGUG--------CGACGa---GCUUAAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 29739 | 0.75 | 0.31461 |
Target: 5'- gGGcGCGGGCGGCAUGCcGCUCGc---- -3' miRNA: 3'- -CC-CGCCUGCUGUGCGaCGAGCuuaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 32764 | 0.69 | 0.645244 |
Target: 5'- cGGCGGcCGGCAgCGCgaaCUCGAagcGUUCg -3' miRNA: 3'- cCCGCCuGCUGU-GCGac-GAGCU---UAAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 20669 | 0.69 | 0.645244 |
Target: 5'- cGGCGcGCcGCGCGCUGCUCGc---- -3' miRNA: 3'- cCCGCcUGcUGUGCGACGAGCuuaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 47800 | 0.69 | 0.664857 |
Target: 5'- aGGCGGcgagccgccgccCGGCGCGgUGCUUGGcgUCa -3' miRNA: 3'- cCCGCCu-----------GCUGUGCgACGAGCUuaAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 63620 | 0.66 | 0.829354 |
Target: 5'- -cGCGGACGuACACGC-GCU-GAGUg- -3' miRNA: 3'- ccCGCCUGC-UGUGCGaCGAgCUUAag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 60994 | 0.66 | 0.811047 |
Target: 5'- aGGCgucgaugaaGGACGACACGgUGCgcacggcCGAcUUCa -3' miRNA: 3'- cCCG---------CCUGCUGUGCgACGa------GCUuAAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 58595 | 0.66 | 0.801611 |
Target: 5'- aGGGCGGuCGACugGUucagGUUCGc---- -3' miRNA: 3'- -CCCGCCuGCUGugCGa---CGAGCuuaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 277 | 0.66 | 0.800658 |
Target: 5'- -uGCGGAucgucacCGGCACGCUGCUguaCGAc--- -3' miRNA: 3'- ccCGCCU-------GCUGUGCGACGA---GCUuaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 6596 | 0.67 | 0.7723 |
Target: 5'- cGGCGaGGuCGGCGCGCUGaucgUCGAGc-- -3' miRNA: 3'- cCCGC-CU-GCUGUGCGACg---AGCUUaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 24478 | 0.67 | 0.752028 |
Target: 5'- -cGCGGACGuGCGCGCcgccgGUUUGGcgUCg -3' miRNA: 3'- ccCGCCUGC-UGUGCGa----CGAGCUuaAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 23925 | 0.67 | 0.741707 |
Target: 5'- aGGGCGGcgugcCGGCcuACGUUGC-CGAGUa- -3' miRNA: 3'- -CCCGCCu----GCUG--UGCGACGaGCUUAag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 24375 | 0.68 | 0.720749 |
Target: 5'- aGGGCGGcgaGCGuCGCGCcgauUGCUgCGAAg-- -3' miRNA: 3'- -CCCGCC---UGCuGUGCG----ACGA-GCUUaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 31354 | 0.68 | 0.710134 |
Target: 5'- -cGCGGACGACuGCGgCUGC-CGA--UCg -3' miRNA: 3'- ccCGCCUGCUG-UGC-GACGaGCUuaAG- -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 46692 | 0.68 | 0.677882 |
Target: 5'- cGGGCGGGaucUGugGCGuCUGCggCGAGg-- -3' miRNA: 3'- -CCCGCCU---GCugUGC-GACGa-GCUUaag -5' |
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23997 | 5' | -54.3 | NC_005262.1 | + | 56641 | 0.79 | 0.178501 |
Target: 5'- uGGCGGAUGAugcgccccuCGCGCUGCUCGAc--- -3' miRNA: 3'- cCCGCCUGCU---------GUGCGACGAGCUuaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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