miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23997 5' -54.3 NC_005262.1 + 63620 0.66 0.829354
Target:  5'- -cGCGGACGuACACGC-GCU-GAGUg- -3'
miRNA:   3'- ccCGCCUGC-UGUGCGaCGAgCUUAag -5'
23997 5' -54.3 NC_005262.1 + 25996 0.71 0.505677
Target:  5'- uGGC-GACGuaccauGCGCGCUGCUCGGcaUCg -3'
miRNA:   3'- cCCGcCUGC------UGUGCGACGAGCUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 15153 0.73 0.426299
Target:  5'- aGGCGGguacaGCGAcCAUGcCUGCUCGAAcUCg -3'
miRNA:   3'- cCCGCC-----UGCU-GUGC-GACGAGCUUaAG- -5'
23997 5' -54.3 NC_005262.1 + 56641 0.79 0.178501
Target:  5'- uGGCGGAUGAugcgccccuCGCGCUGCUCGAc--- -3'
miRNA:   3'- cCCGCCUGCU---------GUGCGACGAGCUuaag -5'
23997 5' -54.3 NC_005262.1 + 6596 0.67 0.7723
Target:  5'- cGGCGaGGuCGGCGCGCUGaucgUCGAGc-- -3'
miRNA:   3'- cCCGC-CU-GCUGUGCGACg---AGCUUaag -5'
23997 5' -54.3 NC_005262.1 + 24478 0.67 0.752028
Target:  5'- -cGCGGACGuGCGCGCcgccgGUUUGGcgUCg -3'
miRNA:   3'- ccCGCCUGC-UGUGCGa----CGAGCUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 24375 0.68 0.720749
Target:  5'- aGGGCGGcgaGCGuCGCGCcgauUGCUgCGAAg-- -3'
miRNA:   3'- -CCCGCC---UGCuGUGCG----ACGA-GCUUaag -5'
23997 5' -54.3 NC_005262.1 + 31354 0.68 0.710134
Target:  5'- -cGCGGACGACuGCGgCUGC-CGA--UCg -3'
miRNA:   3'- ccCGCCUGCUG-UGC-GACGaGCUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 20669 0.69 0.645244
Target:  5'- cGGCGcGCcGCGCGCUGCUCGc---- -3'
miRNA:   3'- cCCGCcUGcUGUGCGACGAGCuuaag -5'
23997 5' -54.3 NC_005262.1 + 10911 0.71 0.526526
Target:  5'- cGGCGGACGcgcAUGCGCUGgUCGugaUCg -3'
miRNA:   3'- cCCGCCUGC---UGUGCGACgAGCuuaAG- -5'
23997 5' -54.3 NC_005262.1 + 54282 0.69 0.645244
Target:  5'- -cGCGGGCGcuggaGCACGC-GCUCGGAc-- -3'
miRNA:   3'- ccCGCCUGC-----UGUGCGaCGAGCUUaag -5'
23997 5' -54.3 NC_005262.1 + 47800 0.69 0.664857
Target:  5'- aGGCGGcgagccgccgccCGGCGCGgUGCUUGGcgUCa -3'
miRNA:   3'- cCCGCCu-----------GCUGUGCgACGAGCUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 60994 0.66 0.811047
Target:  5'- aGGCgucgaugaaGGACGACACGgUGCgcacggcCGAcUUCa -3'
miRNA:   3'- cCCG---------CCUGCUGUGCgACGa------GCUuAAG- -5'
23997 5' -54.3 NC_005262.1 + 6993 0.7 0.589652
Target:  5'- -aGCGGAUgaaguggGGCACGCgGCUCGAAa-- -3'
miRNA:   3'- ccCGCCUG-------CUGUGCGaCGAGCUUaag -5'
23997 5' -54.3 NC_005262.1 + 58595 0.66 0.801611
Target:  5'- aGGGCGGuCGACugGUucagGUUCGc---- -3'
miRNA:   3'- -CCCGCCuGCUGugCGa---CGAGCuuaag -5'
23997 5' -54.3 NC_005262.1 + 46692 0.68 0.677882
Target:  5'- cGGGCGGGaucUGugGCGuCUGCggCGAGg-- -3'
miRNA:   3'- -CCCGCCU---GCugUGC-GACGa-GCUUaag -5'
23997 5' -54.3 NC_005262.1 + 19785 0.7 0.569112
Target:  5'- gGGGUGGugucgAUGACGCGCUGCggaacguaaUCGcuUUCa -3'
miRNA:   3'- -CCCGCC-----UGCUGUGCGACG---------AGCuuAAG- -5'
23997 5' -54.3 NC_005262.1 + 17732 0.72 0.445468
Target:  5'- uGGCGGGCGAUcucuGCcuGCUGCUCGGc--- -3'
miRNA:   3'- cCCGCCUGCUG----UG--CGACGAGCUuaag -5'
23997 5' -54.3 NC_005262.1 + 277 0.66 0.800658
Target:  5'- -uGCGGAucgucacCGGCACGCUGCUguaCGAc--- -3'
miRNA:   3'- ccCGCCU-------GCUGUGCGACGA---GCUuaag -5'
23997 5' -54.3 NC_005262.1 + 23925 0.67 0.741707
Target:  5'- aGGGCGGcgugcCGGCcuACGUUGC-CGAGUa- -3'
miRNA:   3'- -CCCGCCu----GCUG--UGCGACGaGCUUAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.