miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23997 5' -54.3 NC_005262.1 + 20669 0.69 0.645244
Target:  5'- cGGCGcGCcGCGCGCUGCUCGc---- -3'
miRNA:   3'- cCCGCcUGcUGUGCGACGAGCuuaag -5'
23997 5' -54.3 NC_005262.1 + 15153 0.73 0.426299
Target:  5'- aGGCGGguacaGCGAcCAUGcCUGCUCGAAcUCg -3'
miRNA:   3'- cCCGCC-----UGCU-GUGC-GACGAGCUUaAG- -5'
23997 5' -54.3 NC_005262.1 + 10911 0.71 0.526526
Target:  5'- cGGCGGACGcgcAUGCGCUGgUCGugaUCg -3'
miRNA:   3'- cCCGCCUGC---UGUGCGACgAGCuuaAG- -5'
23997 5' -54.3 NC_005262.1 + 32764 0.69 0.645244
Target:  5'- cGGCGGcCGGCAgCGCgaaCUCGAagcGUUCg -3'
miRNA:   3'- cCCGCCuGCUGU-GCGac-GAGCU---UAAG- -5'
23997 5' -54.3 NC_005262.1 + 12947 0.71 0.516059
Target:  5'- aGGGCGugcgcGACGGCAuCGCcgaccGCUCGGcgUCg -3'
miRNA:   3'- -CCCGC-----CUGCUGU-GCGa----CGAGCUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 52708 0.68 0.687611
Target:  5'- cGGCcgacgccGGACGAggcCGCGCUGCUgaCGaAGUUCa -3'
miRNA:   3'- cCCG-------CCUGCU---GUGCGACGA--GC-UUAAG- -5'
23997 5' -54.3 NC_005262.1 + 26556 0.73 0.416901
Target:  5'- -aGCGGcCGACGCGCUGCgCcAGUUCg -3'
miRNA:   3'- ccCGCCuGCUGUGCGACGaGcUUAAG- -5'
23997 5' -54.3 NC_005262.1 + 63357 0.66 0.820298
Target:  5'- aGGCGGAU--CAUGC-GCUCGAAg-- -3'
miRNA:   3'- cCCGCCUGcuGUGCGaCGAGCUUaag -5'
23997 5' -54.3 NC_005262.1 + 48492 0.66 0.817542
Target:  5'- cGGGCGGcgcgACGGCagccgcagguaacaGCGC-GCUCGAc--- -3'
miRNA:   3'- -CCCGCC----UGCUG--------------UGCGaCGAGCUuaag -5'
23997 5' -54.3 NC_005262.1 + 53047 0.66 0.811047
Target:  5'- cGGGCGuGgaguACGACGCGCUGaccggcgCGA--UCg -3'
miRNA:   3'- -CCCGC-C----UGCUGUGCGACga-----GCUuaAG- -5'
23997 5' -54.3 NC_005262.1 + 32652 0.68 0.687611
Target:  5'- -cGCGGGCGAuCAgGuCUGCgaacgcuUCGAGUUCg -3'
miRNA:   3'- ccCGCCUGCU-GUgC-GACG-------AGCUUAAG- -5'
23997 5' -54.3 NC_005262.1 + 35645 0.69 0.612499
Target:  5'- cGGCGGGCGAUggGCUaCUCGGu--- -3'
miRNA:   3'- cCCGCCUGCUGugCGAcGAGCUuaag -5'
23997 5' -54.3 NC_005262.1 + 30095 0.69 0.612499
Target:  5'- aGGGC-GACGACACGCcgGCcgccgCGAAg-- -3'
miRNA:   3'- -CCCGcCUGCUGUGCGa-CGa----GCUUaag -5'
23997 5' -54.3 NC_005262.1 + 45980 0.72 0.485191
Target:  5'- aGGGUugGGACGACAgcCGCgUGUUCGcGUUCc -3'
miRNA:   3'- -CCCG--CCUGCUGU--GCG-ACGAGCuUAAG- -5'
23997 5' -54.3 NC_005262.1 + 34220 0.67 0.731277
Target:  5'- cGGCuucGGGCGACACGCUcgacaugggcGC-CGAGUa- -3'
miRNA:   3'- cCCG---CCUGCUGUGCGA----------CGaGCUUAag -5'
23997 5' -54.3 NC_005262.1 + 45870 0.67 0.752028
Target:  5'- aGGCGGACGGCAUcacGCUCGugaUCc -3'
miRNA:   3'- cCCGCCUGCUGUGcgaCGAGCuuaAG- -5'
23997 5' -54.3 NC_005262.1 + 45011 0.67 0.752028
Target:  5'- cGGCGGACGccaACACGCgGCagauggCGAGc-- -3'
miRNA:   3'- cCCGCCUGC---UGUGCGaCGa-----GCUUaag -5'
23997 5' -54.3 NC_005262.1 + 61166 0.67 0.752028
Target:  5'- cGGCGGGCGagcugacggGCGCGCggcGCUaCGAGa-- -3'
miRNA:   3'- cCCGCCUGC---------UGUGCGa--CGA-GCUUaag -5'
23997 5' -54.3 NC_005262.1 + 21431 0.66 0.811047
Target:  5'- cGGCcGACGucCGCgaGCUGgUCGAGUUCc -3'
miRNA:   3'- cCCGcCUGCu-GUG--CGACgAGCUUAAG- -5'
23997 5' -54.3 NC_005262.1 + 21687 0.66 0.811047
Target:  5'- cGGCGG-CGcCGCGCUGCUguacgCGGGc-- -3'
miRNA:   3'- cCCGCCuGCuGUGCGACGA-----GCUUaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.