miRNA display CGI


Results 1 - 20 of 335 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23998 3' -60.5 NC_005262.1 + 31554 0.66 0.532096
Target:  5'- cGCCGucauccagcgcaagaCCGA-GCuCGaauCCGACGCCGGCGa -3'
miRNA:   3'- -CGGC---------------GGCUaCGcGC---GGCUGCGGUUGC- -5'
23998 3' -60.5 NC_005262.1 + 42167 0.66 0.530082
Target:  5'- cGCgGCCGAucgucugUacgugaugggcgacgGCGCGCCGAagaugauCGUCGGCGg -3'
miRNA:   3'- -CGgCGGCU-------A---------------CGCGCGGCU-------GCGGUUGC- -5'
23998 3' -60.5 NC_005262.1 + 56529 0.66 0.528072
Target:  5'- uGCCGCCGAUcagcaCGCGCuuuuugcccucgCGcAUGUCGGCGa -3'
miRNA:   3'- -CGGCGGCUAc----GCGCG------------GC-UGCGGUUGC- -5'
23998 3' -60.5 NC_005262.1 + 19603 0.66 0.528072
Target:  5'- cGUCGCCuucGGUGCGaguggcgGUCGGCGuCCAGCc -3'
miRNA:   3'- -CGGCGG---CUACGCg------CGGCUGC-GGUUGc -5'
23998 3' -60.5 NC_005262.1 + 16409 0.66 0.528072
Target:  5'- gGCCGCCGGgauucUGCGcCGCgaGGCGCaaggaGAUa -3'
miRNA:   3'- -CGGCGGCU-----ACGC-GCGg-CUGCGg----UUGc -5'
23998 3' -60.5 NC_005262.1 + 59137 0.66 0.528072
Target:  5'- aCCgGCCGGgccGCGuCGCCG-CGCgCAugGa -3'
miRNA:   3'- cGG-CGGCUa--CGC-GCGGCuGCG-GUugC- -5'
23998 3' -60.5 NC_005262.1 + 5241 0.66 0.528072
Target:  5'- cGUCaCCGAUcaGCGCGCCGagcaggaucaGCGCCGcccgucGCGc -3'
miRNA:   3'- -CGGcGGCUA--CGCGCGGC----------UGCGGU------UGC- -5'
23998 3' -60.5 NC_005262.1 + 43716 0.66 0.528072
Target:  5'- cCUGCCaguucUGCGCCGGUGCCGGCGa -3'
miRNA:   3'- cGGCGGcuac-GCGCGGCUGCGGUUGC- -5'
23998 3' -60.5 NC_005262.1 + 46031 0.66 0.522057
Target:  5'- cGCUGCCGcgcuacuacgaagucAUGCGCGC-GuCGCCGGa- -3'
miRNA:   3'- -CGGCGGC---------------UACGCGCGgCuGCGGUUgc -5'
23998 3' -60.5 NC_005262.1 + 52139 0.66 0.521057
Target:  5'- uGCUGUCGuucugggaggcgGCGCGCaacuaccccggccuCGACGCCGAgGg -3'
miRNA:   3'- -CGGCGGCua----------CGCGCG--------------GCUGCGGUUgC- -5'
23998 3' -60.5 NC_005262.1 + 24564 0.66 0.518063
Target:  5'- cCUGCUGAU-CGCGuCCGuCGCCGugucGCGg -3'
miRNA:   3'- cGGCGGCUAcGCGC-GGCuGCGGU----UGC- -5'
23998 3' -60.5 NC_005262.1 + 42797 0.66 0.518063
Target:  5'- cGUCuCCGgcGCGuCGcCCGACGCCAu-- -3'
miRNA:   3'- -CGGcGGCuaCGC-GC-GGCUGCGGUugc -5'
23998 3' -60.5 NC_005262.1 + 32018 0.66 0.518063
Target:  5'- aCCGCCGuacagcagGUG-GUCGACGuCCGGCGc -3'
miRNA:   3'- cGGCGGCua------CGCgCGGCUGC-GGUUGC- -5'
23998 3' -60.5 NC_005262.1 + 36623 0.66 0.518063
Target:  5'- -gCGcCCGAUaaucccagucGcCGCGCCGAcCGUCAACGu -3'
miRNA:   3'- cgGC-GGCUA----------C-GCGCGGCU-GCGGUUGC- -5'
23998 3' -60.5 NC_005262.1 + 36217 0.66 0.518063
Target:  5'- cGCUGgCGGUGCucgccuCGCCGuauCGCgCAGCGu -3'
miRNA:   3'- -CGGCgGCUACGc-----GCGGCu--GCG-GUUGC- -5'
23998 3' -60.5 NC_005262.1 + 35044 0.66 0.518063
Target:  5'- uGCgGCCGAgcgcCGCGUCGAacuUGCCGcCGa -3'
miRNA:   3'- -CGgCGGCUac--GCGCGGCU---GCGGUuGC- -5'
23998 3' -60.5 NC_005262.1 + 52730 0.66 0.518063
Target:  5'- cGCUGCUGAcgaaguucaCGgGCUggGGCGCCAGCGa -3'
miRNA:   3'- -CGGCGGCUac-------GCgCGG--CUGCGGUUGC- -5'
23998 3' -60.5 NC_005262.1 + 51350 0.66 0.518063
Target:  5'- uCCGCC-AUGCagcucggcaccGCGCCGuccgcgACGCCGGCc -3'
miRNA:   3'- cGGCGGcUACG-----------CGCGGC------UGCGGUUGc -5'
23998 3' -60.5 NC_005262.1 + 54413 0.66 0.518063
Target:  5'- aGgUGCCGA-GCGCGUCGAUGacgucCUGGCGg -3'
miRNA:   3'- -CgGCGGCUaCGCGCGGCUGC-----GGUUGC- -5'
23998 3' -60.5 NC_005262.1 + 24443 0.66 0.518063
Target:  5'- gGuuGCaGGUaucagGCGCGCCGACGCagAGCc -3'
miRNA:   3'- -CggCGgCUA-----CGCGCGGCUGCGg-UUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.