miRNA display CGI


Results 1 - 20 of 335 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23998 3' -60.5 NC_005262.1 + 48086 0.73 0.184412
Target:  5'- aGCCGCCc--G-GCGCCGACGCgCGAUGa -3'
miRNA:   3'- -CGGCGGcuaCgCGCGGCUGCG-GUUGC- -5'
23998 3' -60.5 NC_005262.1 + 46553 0.76 0.121481
Target:  5'- gGCCGCCGcucccGCGaCGCCcacgacgaccacGACGCCAGCGc -3'
miRNA:   3'- -CGGCGGCua---CGC-GCGG------------CUGCGGUUGC- -5'
23998 3' -60.5 NC_005262.1 + 15895 0.76 0.128093
Target:  5'- uCCGCCGcGUGCGCGCgacgUGGCGCC-GCGa -3'
miRNA:   3'- cGGCGGC-UACGCGCG----GCUGCGGuUGC- -5'
23998 3' -60.5 NC_005262.1 + 54103 0.75 0.131523
Target:  5'- cCCGCUGcUGCGCcUCGACGUCGACGg -3'
miRNA:   3'- cGGCGGCuACGCGcGGCUGCGGUUGC- -5'
23998 3' -60.5 NC_005262.1 + 3685 0.74 0.153934
Target:  5'- gGCCGUgaCGAcgGUGaUGCCGGCGCCGACa -3'
miRNA:   3'- -CGGCG--GCUa-CGC-GCGGCUGCGGUUGc -5'
23998 3' -60.5 NC_005262.1 + 35155 0.74 0.153934
Target:  5'- aCCGCCGAUccggGCGaCGCUGGCGgCAAUGa -3'
miRNA:   3'- cGGCGGCUA----CGC-GCGGCUGCgGUUGC- -5'
23998 3' -60.5 NC_005262.1 + 46686 0.74 0.166395
Target:  5'- cCCGCCGAUGCagucaGCGCCGcGCGCgCAGUGg -3'
miRNA:   3'- cGGCGGCUACG-----CGCGGC-UGCG-GUUGC- -5'
23998 3' -60.5 NC_005262.1 + 12116 0.73 0.179752
Target:  5'- cGCCGCCG-UGCGCGCgagcaGAuCGCCG-CGc -3'
miRNA:   3'- -CGGCGGCuACGCGCGg----CU-GCGGUuGC- -5'
23998 3' -60.5 NC_005262.1 + 33632 0.73 0.184412
Target:  5'- aGCCGCCGgcGCagGUGuCCGAgGCUGACGa -3'
miRNA:   3'- -CGGCGGCuaCG--CGC-GGCUgCGGUUGC- -5'
23998 3' -60.5 NC_005262.1 + 11427 0.77 0.106316
Target:  5'- gGCCGCCGAaggUGCGCgacacGCCG-CGCCcGCGc -3'
miRNA:   3'- -CGGCGGCU---ACGCG-----CGGCuGCGGuUGC- -5'
23998 3' -60.5 NC_005262.1 + 30602 0.77 0.098089
Target:  5'- aGCCGCUGAaggGCGCgaagaucgaGCCGcCGCCGACGc -3'
miRNA:   3'- -CGGCGGCUa--CGCG---------CGGCuGCGGUUGC- -5'
23998 3' -60.5 NC_005262.1 + 54436 0.77 0.095483
Target:  5'- gGCCGCCGc-GCGCGCCGACcggaaguaucaGCgCAACGu -3'
miRNA:   3'- -CGGCGGCuaCGCGCGGCUG-----------CG-GUUGC- -5'
23998 3' -60.5 NC_005262.1 + 49998 0.82 0.041969
Target:  5'- cCCGCCGAUGaagcCGCGCCGGCGCCcACc -3'
miRNA:   3'- cGGCGGCUAC----GCGCGGCUGCGGuUGc -5'
23998 3' -60.5 NC_005262.1 + 51162 0.8 0.06349
Target:  5'- aGUCGCCGA-GCGCGCagcaGGCaGCCGACGa -3'
miRNA:   3'- -CGGCGGCUaCGCGCGg---CUG-CGGUUGC- -5'
23998 3' -60.5 NC_005262.1 + 34743 0.79 0.070837
Target:  5'- aGCCGaacaCGGUGCGCGUCG-UGCCGGCGc -3'
miRNA:   3'- -CGGCg---GCUACGCGCGGCuGCGGUUGC- -5'
23998 3' -60.5 NC_005262.1 + 49734 0.79 0.07481
Target:  5'- gGCgGCCGAaGcCGCaCCGACGCCGGCGg -3'
miRNA:   3'- -CGgCGGCUaC-GCGcGGCUGCGGUUGC- -5'
23998 3' -60.5 NC_005262.1 + 30144 0.79 0.076876
Target:  5'- gGUCGCCGAaGCGCcgGCgGAUGCCGACGc -3'
miRNA:   3'- -CGGCGGCUaCGCG--CGgCUGCGGUUGC- -5'
23998 3' -60.5 NC_005262.1 + 50262 0.79 0.076876
Target:  5'- cGCCGCaaCGAggGCGCGCCcGCGCCGGCc -3'
miRNA:   3'- -CGGCG--GCUa-CGCGCGGcUGCGGUUGc -5'
23998 3' -60.5 NC_005262.1 + 44967 0.78 0.083407
Target:  5'- gGCCGCCGAgGCGaggGCCGACGUgCAGCa -3'
miRNA:   3'- -CGGCGGCUaCGCg--CGGCUGCG-GUUGc -5'
23998 3' -60.5 NC_005262.1 + 31047 0.78 0.090466
Target:  5'- cGCCuGCUGGUGC-UGaCCGACGCCGACGc -3'
miRNA:   3'- -CGG-CGGCUACGcGC-GGCUGCGGUUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.