miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23998 5' -53.6 NC_005262.1 + 42842 0.66 0.876342
Target:  5'- cGUCGCGAccacgaUCGUCGU-GCcgUaGGCGCc -3'
miRNA:   3'- -CAGCGCU------AGCAGUAgCGuaGcCUGCG- -5'
23998 5' -53.6 NC_005262.1 + 24811 0.66 0.876342
Target:  5'- aUCGCGcgCGcCAgCGCGaucagcuccUCGGugGUg -3'
miRNA:   3'- cAGCGCuaGCaGUaGCGU---------AGCCugCG- -5'
23998 5' -53.6 NC_005262.1 + 53276 0.66 0.876342
Target:  5'- cUCGgGGucauUCGUCA-CGaCGaCGGACGCg -3'
miRNA:   3'- cAGCgCU----AGCAGUaGC-GUaGCCUGCG- -5'
23998 5' -53.6 NC_005262.1 + 17084 0.66 0.876342
Target:  5'- -gCGCGccCGUCGaCGCggCGGGcCGCg -3'
miRNA:   3'- caGCGCuaGCAGUaGCGuaGCCU-GCG- -5'
23998 5' -53.6 NC_005262.1 + 817 0.66 0.876342
Target:  5'- uGUCGuCGAUCGugaccuUCAUUGCuuGUCuccaucgagaaGGGCGCg -3'
miRNA:   3'- -CAGC-GCUAGC------AGUAGCG--UAG-----------CCUGCG- -5'
23998 5' -53.6 NC_005262.1 + 33380 0.66 0.867779
Target:  5'- -cCGUGAUCGUCGaCGCcgcccagcucaagGUCGcaGGCGCc -3'
miRNA:   3'- caGCGCUAGCAGUaGCG-------------UAGC--CUGCG- -5'
23998 5' -53.6 NC_005262.1 + 49614 0.66 0.860557
Target:  5'- -cCGCGA-CGUCGcuaaccaggCGC-UCGGugGCc -3'
miRNA:   3'- caGCGCUaGCAGUa--------GCGuAGCCugCG- -5'
23998 5' -53.6 NC_005262.1 + 30922 0.66 0.860557
Target:  5'- cGUCGaCGAUgCG-CGUCGC--CGaGACGCg -3'
miRNA:   3'- -CAGC-GCUA-GCaGUAGCGuaGC-CUGCG- -5'
23998 5' -53.6 NC_005262.1 + 61959 0.66 0.860557
Target:  5'- uUCGUgcuGAUCGUCggCGCcUUGG-CGCu -3'
miRNA:   3'- cAGCG---CUAGCAGuaGCGuAGCCuGCG- -5'
23998 5' -53.6 NC_005262.1 + 35351 0.66 0.852311
Target:  5'- uUCGUGGUCGUgCcguUCGCcggGGGCGCc -3'
miRNA:   3'- cAGCGCUAGCA-Gu--AGCGuagCCUGCG- -5'
23998 5' -53.6 NC_005262.1 + 59147 0.66 0.852311
Target:  5'- -cCGCG-UCGcCGcgCGCAUggaGGACGCg -3'
miRNA:   3'- caGCGCuAGCaGUa-GCGUAg--CCUGCG- -5'
23998 5' -53.6 NC_005262.1 + 36444 0.66 0.848949
Target:  5'- -aCGUGGUCGUUcaagaagucuggCGCAU-GGGCGCg -3'
miRNA:   3'- caGCGCUAGCAGua----------GCGUAgCCUGCG- -5'
23998 5' -53.6 NC_005262.1 + 26647 0.66 0.843839
Target:  5'- -gCGCGAacuggCG-CAgCGCGUCGGcCGCu -3'
miRNA:   3'- caGCGCUa----GCaGUaGCGUAGCCuGCG- -5'
23998 5' -53.6 NC_005262.1 + 10312 0.66 0.843839
Target:  5'- uGUauCGAUCgGUCGUCGCGagaCGGAUGUu -3'
miRNA:   3'- -CAgcGCUAG-CAGUAGCGUa--GCCUGCG- -5'
23998 5' -53.6 NC_005262.1 + 24544 0.66 0.838651
Target:  5'- uUCGCGAUCGcCGgcgugauccugcugaUCGCGUCcGuCGCc -3'
miRNA:   3'- cAGCGCUAGCaGU---------------AGCGUAGcCuGCG- -5'
23998 5' -53.6 NC_005262.1 + 24556 0.67 0.826251
Target:  5'- -gCGCGAcgcUCGUgccgugcagcgcCAUCG-AUCGGGCGUg -3'
miRNA:   3'- caGCGCU---AGCA------------GUAGCgUAGCCUGCG- -5'
23998 5' -53.6 NC_005262.1 + 23018 0.67 0.826251
Target:  5'- cUCGCG--CGgagCAUgGCGUCGGcgaGCGCg -3'
miRNA:   3'- cAGCGCuaGCa--GUAgCGUAGCC---UGCG- -5'
23998 5' -53.6 NC_005262.1 + 49378 0.67 0.826251
Target:  5'- -aCGCGcgCGuUCAUCaCcgCGGGCGUc -3'
miRNA:   3'- caGCGCuaGC-AGUAGcGuaGCCUGCG- -5'
23998 5' -53.6 NC_005262.1 + 36523 0.67 0.82535
Target:  5'- cGUUGaCGGUCGg---CGCGgcgacugggauuaUCGGGCGCa -3'
miRNA:   3'- -CAGC-GCUAGCaguaGCGU-------------AGCCUGCG- -5'
23998 5' -53.6 NC_005262.1 + 45846 0.67 0.820816
Target:  5'- -aUGcCGAUCGgCGUCGCGuucgcgggaacgaugUCGGACGg -3'
miRNA:   3'- caGC-GCUAGCaGUAGCGU---------------AGCCUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.