Results 1 - 20 of 219 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23999 | 3' | -54 | NC_005262.1 | + | 55130 | 0.65 | 0.830692 |
Target: 5'- uCGCGCAGUucgcacgcgaauuCCUCGA-GCUcuacccGGCCg -3' miRNA: 3'- cGCGCGUCGu------------GGAGCUuCGAua----UCGG- -5' |
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23999 | 3' | -54 | NC_005262.1 | + | 11426 | 0.66 | 0.825242 |
Target: 5'- cGCGCGCgAGCGgCgucuugCGGAGgag-GGCCg -3' miRNA: 3'- -CGCGCG-UCGUgGa-----GCUUCgauaUCGG- -5' |
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23999 | 3' | -54 | NC_005262.1 | + | 40801 | 0.66 | 0.825242 |
Target: 5'- aGgGCGuCAGCGCCgcCGua-UUAUGGCCg -3' miRNA: 3'- -CgCGC-GUCGUGGa-GCuucGAUAUCGG- -5' |
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23999 | 3' | -54 | NC_005262.1 | + | 7084 | 0.66 | 0.825242 |
Target: 5'- cGC-CGC-GCugUUCGAAGCguc-GCCg -3' miRNA: 3'- -CGcGCGuCGugGAGCUUCGauauCGG- -5' |
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23999 | 3' | -54 | NC_005262.1 | + | 42761 | 0.66 | 0.825242 |
Target: 5'- cGCGUGCgGGCGCCaCGGcucGCag-AGCCa -3' miRNA: 3'- -CGCGCG-UCGUGGaGCUu--CGauaUCGG- -5' |
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23999 | 3' | -54 | NC_005262.1 | + | 40418 | 0.66 | 0.825242 |
Target: 5'- cGCGCGuCGGCgACCUgaaaaucuggaCgGggGCUAUcaccgacaucccGGCCg -3' miRNA: 3'- -CGCGC-GUCG-UGGA-----------G-CuuCGAUA------------UCGG- -5' |
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23999 | 3' | -54 | NC_005262.1 | + | 16800 | 0.66 | 0.822489 |
Target: 5'- gGUGCGCacagggguaucgAGCACCUgcgugaCGAugcacuccucgcccGGCUGcGGCCa -3' miRNA: 3'- -CGCGCG------------UCGUGGA------GCU--------------UCGAUaUCGG- -5' |
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23999 | 3' | -54 | NC_005262.1 | + | 21357 | 0.66 | 0.815995 |
Target: 5'- cUGCGCAGU--CUUGgcGCUGaAGCCc -3' miRNA: 3'- cGCGCGUCGugGAGCuuCGAUaUCGG- -5' |
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23999 | 3' | -54 | NC_005262.1 | + | 17550 | 0.66 | 0.815995 |
Target: 5'- cGCGCGCgaggcGGCAgCCgcggCGgcGCgcgaAGCCg -3' miRNA: 3'- -CGCGCG-----UCGU-GGa---GCuuCGaua-UCGG- -5' |
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23999 | 3' | -54 | NC_005262.1 | + | 16002 | 0.66 | 0.815995 |
Target: 5'- uGCaGCGCGGCACCgaCGAcgAGCa--GGCg -3' miRNA: 3'- -CG-CGCGUCGUGGa-GCU--UCGauaUCGg -5' |
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23999 | 3' | -54 | NC_005262.1 | + | 9943 | 0.66 | 0.815995 |
Target: 5'- -aGCGCAGCGCgCUgacggCGAAGaagAUuGCCg -3' miRNA: 3'- cgCGCGUCGUG-GA-----GCUUCga-UAuCGG- -5' |
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23999 | 3' | -54 | NC_005262.1 | + | 16587 | 0.66 | 0.815995 |
Target: 5'- gGCGCGU-GUGCUggUCGAGGCggcgaagcAGCCg -3' miRNA: 3'- -CGCGCGuCGUGG--AGCUUCGaua-----UCGG- -5' |
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23999 | 3' | -54 | NC_005262.1 | + | 62936 | 0.66 | 0.815995 |
Target: 5'- gGCGUGCcauccucGUACCgCGucGAGCcGUGGCCg -3' miRNA: 3'- -CGCGCGu------CGUGGaGC--UUCGaUAUCGG- -5' |
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23999 | 3' | -54 | NC_005262.1 | + | 2737 | 0.66 | 0.815995 |
Target: 5'- cCGCcCGGCGCCgCGcAGGCaugGGCCg -3' miRNA: 3'- cGCGcGUCGUGGaGC-UUCGauaUCGG- -5' |
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23999 | 3' | -54 | NC_005262.1 | + | 54198 | 0.66 | 0.815995 |
Target: 5'- aGCGCGUgcuccAGCGCC-CGc-GCg--AGCCg -3' miRNA: 3'- -CGCGCG-----UCGUGGaGCuuCGauaUCGG- -5' |
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23999 | 3' | -54 | NC_005262.1 | + | 60340 | 0.66 | 0.815995 |
Target: 5'- cGCGCGCGGCuACCU-GAAGgac-GGCa -3' miRNA: 3'- -CGCGCGUCG-UGGAgCUUCgauaUCGg -5' |
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23999 | 3' | -54 | NC_005262.1 | + | 46782 | 0.66 | 0.815995 |
Target: 5'- aCGCGCGGUAUCaaCGGcGGCg--AGCCg -3' miRNA: 3'- cGCGCGUCGUGGa-GCU-UCGauaUCGG- -5' |
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23999 | 3' | -54 | NC_005262.1 | + | 28410 | 0.66 | 0.815995 |
Target: 5'- aCGaGCGGCACgugCUCGAGGUcgaaUcgGGCCg -3' miRNA: 3'- cGCgCGUCGUG---GAGCUUCG----AuaUCGG- -5' |
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23999 | 3' | -54 | NC_005262.1 | + | 685 | 0.66 | 0.81506 |
Target: 5'- cCGCGCAcGuCACCUCGGcgAGUucgucgucgaugaUGUAGCg -3' miRNA: 3'- cGCGCGU-C-GUGGAGCU--UCG-------------AUAUCGg -5' |
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23999 | 3' | -54 | NC_005262.1 | + | 15496 | 0.66 | 0.806555 |
Target: 5'- -aGCGCGGCGgCUCGcucaccGGCg--AGCUg -3' miRNA: 3'- cgCGCGUCGUgGAGCu-----UCGauaUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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