miRNA display CGI


Results 1 - 20 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23999 3' -54 NC_005262.1 + 55130 0.65 0.830692
Target:  5'- uCGCGCAGUucgcacgcgaauuCCUCGA-GCUcuacccGGCCg -3'
miRNA:   3'- cGCGCGUCGu------------GGAGCUuCGAua----UCGG- -5'
23999 3' -54 NC_005262.1 + 43239 0.66 0.796931
Target:  5'- uCGUGUGGCG-CUCGAAGCaGUacgucgugcagaAGCCg -3'
miRNA:   3'- cGCGCGUCGUgGAGCUUCGaUA------------UCGG- -5'
23999 3' -54 NC_005262.1 + 2728 0.66 0.796931
Target:  5'- -aGCGCucgcccuGCGCCUCGAGGUcccggAUGcGCUu -3'
miRNA:   3'- cgCGCGu------CGUGGAGCUUCGa----UAU-CGG- -5'
23999 3' -54 NC_005262.1 + 49860 0.66 0.787133
Target:  5'- gGCG-GCGGUACCg-GAAGCagcucAGCCg -3'
miRNA:   3'- -CGCgCGUCGUGGagCUUCGaua--UCGG- -5'
23999 3' -54 NC_005262.1 + 22480 0.66 0.796931
Target:  5'- aGCGCGaAGCGCU--GAAGCUGgcGCg -3'
miRNA:   3'- -CGCGCgUCGUGGagCUUCGAUauCGg -5'
23999 3' -54 NC_005262.1 + 35880 0.66 0.801765
Target:  5'- aCGCGC-GCACCUaucggcucauccaCGggGCcggcacagugucgAUGGCCu -3'
miRNA:   3'- cGCGCGuCGUGGA-------------GCuuCGa------------UAUCGG- -5'
23999 3' -54 NC_005262.1 + 16587 0.66 0.815995
Target:  5'- gGCGCGU-GUGCUggUCGAGGCggcgaagcAGCCg -3'
miRNA:   3'- -CGCGCGuCGUGG--AGCUUCGaua-----UCGG- -5'
23999 3' -54 NC_005262.1 + 9943 0.66 0.815995
Target:  5'- -aGCGCAGCGCgCUgacggCGAAGaagAUuGCCg -3'
miRNA:   3'- cgCGCGUCGUG-GA-----GCUUCga-UAuCGG- -5'
23999 3' -54 NC_005262.1 + 16002 0.66 0.815995
Target:  5'- uGCaGCGCGGCACCgaCGAcgAGCa--GGCg -3'
miRNA:   3'- -CG-CGCGUCGUGGa-GCU--UCGauaUCGg -5'
23999 3' -54 NC_005262.1 + 48521 0.66 0.806555
Target:  5'- aGCGCGCucgaccuGCAaucgcgUCUCGAuGCgcaggAGCCg -3'
miRNA:   3'- -CGCGCGu------CGU------GGAGCUuCGaua--UCGG- -5'
23999 3' -54 NC_005262.1 + 59417 0.66 0.796931
Target:  5'- aCGCGCAacGCucgACCU-GAAGCU--GGCCu -3'
miRNA:   3'- cGCGCGU--CG---UGGAgCUUCGAuaUCGG- -5'
23999 3' -54 NC_005262.1 + 54198 0.66 0.815995
Target:  5'- aGCGCGUgcuccAGCGCC-CGc-GCg--AGCCg -3'
miRNA:   3'- -CGCGCG-----UCGUGGaGCuuCGauaUCGG- -5'
23999 3' -54 NC_005262.1 + 15496 0.66 0.806555
Target:  5'- -aGCGCGGCGgCUCGcucaccGGCg--AGCUg -3'
miRNA:   3'- cgCGCGUCGUgGAGCu-----UCGauaUCGG- -5'
23999 3' -54 NC_005262.1 + 28410 0.66 0.815995
Target:  5'- aCGaGCGGCACgugCUCGAGGUcgaaUcgGGCCg -3'
miRNA:   3'- cGCgCGUCGUG---GAGCUUCG----AuaUCGG- -5'
23999 3' -54 NC_005262.1 + 17550 0.66 0.815995
Target:  5'- cGCGCGCgaggcGGCAgCCgcggCGgcGCgcgaAGCCg -3'
miRNA:   3'- -CGCGCG-----UCGU-GGa---GCuuCGaua-UCGG- -5'
23999 3' -54 NC_005262.1 + 60340 0.66 0.815995
Target:  5'- cGCGCGCGGCuACCU-GAAGgac-GGCa -3'
miRNA:   3'- -CGCGCGUCG-UGGAgCUUCgauaUCGg -5'
23999 3' -54 NC_005262.1 + 685 0.66 0.81506
Target:  5'- cCGCGCAcGuCACCUCGGcgAGUucgucgucgaugaUGUAGCg -3'
miRNA:   3'- cGCGCGU-C-GUGGAGCU--UCG-------------AUAUCGg -5'
23999 3' -54 NC_005262.1 + 46782 0.66 0.815995
Target:  5'- aCGCGCGGUAUCaaCGGcGGCg--AGCCg -3'
miRNA:   3'- cGCGCGUCGUGGa-GCU-UCGauaUCGG- -5'
23999 3' -54 NC_005262.1 + 40418 0.66 0.825242
Target:  5'- cGCGCGuCGGCgACCUgaaaaucuggaCgGggGCUAUcaccgacaucccGGCCg -3'
miRNA:   3'- -CGCGC-GUCG-UGGA-----------G-CuuCGAUA------------UCGG- -5'
23999 3' -54 NC_005262.1 + 6122 0.66 0.806555
Target:  5'- gGCgGCaCAGuCGCCUCGAuguGCgc-GGCCg -3'
miRNA:   3'- -CG-CGcGUC-GUGGAGCUu--CGauaUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.