miRNA display CGI


Results 21 - 40 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23999 3' -54 NC_005262.1 + 34278 0.66 0.806555
Target:  5'- cGCGgGCGGCAgCUCGGAauGC---AGCg -3'
miRNA:   3'- -CGCgCGUCGUgGAGCUU--CGauaUCGg -5'
23999 3' -54 NC_005262.1 + 6122 0.66 0.806555
Target:  5'- gGCgGCaCAGuCGCCUCGAuguGCgc-GGCCg -3'
miRNA:   3'- -CG-CGcGUC-GUGGAGCUu--CGauaUCGG- -5'
23999 3' -54 NC_005262.1 + 48521 0.66 0.806555
Target:  5'- aGCGCGCucgaccuGCAaucgcgUCUCGAuGCgcaggAGCCg -3'
miRNA:   3'- -CGCGCGu------CGU------GGAGCUuCGaua--UCGG- -5'
23999 3' -54 NC_005262.1 + 15496 0.66 0.806555
Target:  5'- -aGCGCGGCGgCUCGcucaccGGCg--AGCUg -3'
miRNA:   3'- cgCGCGUCGUgGAGCu-----UCGauaUCGG- -5'
23999 3' -54 NC_005262.1 + 35880 0.66 0.801765
Target:  5'- aCGCGC-GCACCUaucggcucauccaCGggGCcggcacagugucgAUGGCCu -3'
miRNA:   3'- cGCGCGuCGUGGA-------------GCuuCGa------------UAUCGG- -5'
23999 3' -54 NC_005262.1 + 2728 0.66 0.796931
Target:  5'- -aGCGCucgcccuGCGCCUCGAGGUcccggAUGcGCUu -3'
miRNA:   3'- cgCGCGu------CGUGGAGCUUCGa----UAU-CGG- -5'
23999 3' -54 NC_005262.1 + 8966 0.66 0.796931
Target:  5'- cGUGCGguGUGCCccaaugCGAcgAGCUAUcGCUc -3'
miRNA:   3'- -CGCGCguCGUGGa-----GCU--UCGAUAuCGG- -5'
23999 3' -54 NC_005262.1 + 43239 0.66 0.796931
Target:  5'- uCGUGUGGCG-CUCGAAGCaGUacgucgugcagaAGCCg -3'
miRNA:   3'- cGCGCGUCGUgGAGCUUCGaUA------------UCGG- -5'
23999 3' -54 NC_005262.1 + 14655 0.66 0.796931
Target:  5'- uGCGCGUgAGCGCCgcggCGAGacGCcu--GCCg -3'
miRNA:   3'- -CGCGCG-UCGUGGa---GCUU--CGauauCGG- -5'
23999 3' -54 NC_005262.1 + 22480 0.66 0.796931
Target:  5'- aGCGCGaAGCGCU--GAAGCUGgcGCg -3'
miRNA:   3'- -CGCGCgUCGUGGagCUUCGAUauCGg -5'
23999 3' -54 NC_005262.1 + 59417 0.66 0.796931
Target:  5'- aCGCGCAacGCucgACCU-GAAGCU--GGCCu -3'
miRNA:   3'- cGCGCGU--CG---UGGAgCUUCGAuaUCGG- -5'
23999 3' -54 NC_005262.1 + 44700 0.66 0.787133
Target:  5'- uGCGCGCgGGCuuCUCGc-GCUcgAGCg -3'
miRNA:   3'- -CGCGCG-UCGugGAGCuuCGAuaUCGg -5'
23999 3' -54 NC_005262.1 + 35476 0.66 0.787133
Target:  5'- uGCGCGCGGUAUUgagCGccGCgugcGCCa -3'
miRNA:   3'- -CGCGCGUCGUGGa--GCuuCGauauCGG- -5'
23999 3' -54 NC_005262.1 + 45720 0.66 0.787133
Target:  5'- uCGCGCGuCuCCggGAAGCUGUcGCCg -3'
miRNA:   3'- cGCGCGUcGuGGagCUUCGAUAuCGG- -5'
23999 3' -54 NC_005262.1 + 44783 0.66 0.787133
Target:  5'- cGCGCGCGGCgauGCCacguUCGGaucgGGCgcgGGCg -3'
miRNA:   3'- -CGCGCGUCG---UGG----AGCU----UCGauaUCGg -5'
23999 3' -54 NC_005262.1 + 11297 0.66 0.787133
Target:  5'- -gGCGCGGC-UCUCGAucuuGCagGUGGCg -3'
miRNA:   3'- cgCGCGUCGuGGAGCUu---CGa-UAUCGg -5'
23999 3' -54 NC_005262.1 + 2023 0.66 0.787133
Target:  5'- gGCGCuGCuucguGCugCUCGAcggGGCgcGUAGCg -3'
miRNA:   3'- -CGCG-CGu----CGugGAGCU---UCGa-UAUCGg -5'
23999 3' -54 NC_005262.1 + 49860 0.66 0.787133
Target:  5'- gGCG-GCGGUACCg-GAAGCagcucAGCCg -3'
miRNA:   3'- -CGCgCGUCGUGGagCUUCGaua--UCGG- -5'
23999 3' -54 NC_005262.1 + 63395 0.66 0.787133
Target:  5'- gGCGCGCGuguucCACgUCGAcGCcg-AGCCa -3'
miRNA:   3'- -CGCGCGUc----GUGgAGCUuCGauaUCGG- -5'
23999 3' -54 NC_005262.1 + 11838 0.66 0.787133
Target:  5'- cGCGC-CAGUugUUCGAGGaagAUcgcgaAGCCg -3'
miRNA:   3'- -CGCGcGUCGugGAGCUUCga-UA-----UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.