miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23999 5' -55.1 NC_005262.1 + 25920 0.66 0.793583
Target:  5'- cAUGGUacGUcGCCacgCGCGACGCCGa -3'
miRNA:   3'- -UGCCAacUAcUGGaa-GCGCUGCGGCa -5'
23999 5' -55.1 NC_005262.1 + 57327 0.66 0.787783
Target:  5'- -aGGUUGuucACCUgauuggcggcgcgcgUCGCGAUGCCGc -3'
miRNA:   3'- ugCCAACuacUGGA---------------AGCGCUGCGGCa -5'
23999 5' -55.1 NC_005262.1 + 12846 0.66 0.783884
Target:  5'- cGCGGgaaccgucgUGccGAgCUUCGCGcUGCCGUg -3'
miRNA:   3'- -UGCCa--------ACuaCUgGAAGCGCuGCGGCA- -5'
23999 5' -55.1 NC_005262.1 + 41378 0.66 0.780944
Target:  5'- aACGGcacgGcUGACCUacgcgaccgcuucaUCGuCGGCGCCGg -3'
miRNA:   3'- -UGCCaa--CuACUGGA--------------AGC-GCUGCGGCa -5'
23999 5' -55.1 NC_005262.1 + 63495 0.66 0.774031
Target:  5'- uCGGcuUUGcgGGCCUUCucCGACGCCu- -3'
miRNA:   3'- uGCC--AACuaCUGGAAGc-GCUGCGGca -5'
23999 5' -55.1 NC_005262.1 + 35372 0.66 0.764035
Target:  5'- -gGGUaGAUGACCUgauucgaguUCGUGGucgUGCCGUu -3'
miRNA:   3'- ugCCAaCUACUGGA---------AGCGCU---GCGGCA- -5'
23999 5' -55.1 NC_005262.1 + 479 0.66 0.764035
Target:  5'- uCGGaugcUGAUGugCUUCGCGGgcugcuCGCUGa -3'
miRNA:   3'- uGCCa---ACUACugGAAGCGCU------GCGGCa -5'
23999 5' -55.1 NC_005262.1 + 10209 0.66 0.753908
Target:  5'- cGCGGUUGcgaacauCCgucUCGCGACGaCCGa -3'
miRNA:   3'- -UGCCAACuacu---GGa--AGCGCUGC-GGCa -5'
23999 5' -55.1 NC_005262.1 + 37614 0.66 0.753908
Target:  5'- uCGaGUUGAUcGACacucagCUUCGCGACgguGCCGUa -3'
miRNA:   3'- uGC-CAACUA-CUG------GAAGCGCUG---CGGCA- -5'
23999 5' -55.1 NC_005262.1 + 34002 0.66 0.743659
Target:  5'- cAUGGgcGcgGACgg-CGUGACGCCGg -3'
miRNA:   3'- -UGCCaaCuaCUGgaaGCGCUGCGGCa -5'
23999 5' -55.1 NC_005262.1 + 30203 0.67 0.701675
Target:  5'- aGCGGcacGAucgUGGgCUUCGCGGCgGCCGg -3'
miRNA:   3'- -UGCCaa-CU---ACUgGAAGCGCUG-CGGCa -5'
23999 5' -55.1 NC_005262.1 + 54093 0.67 0.701675
Target:  5'- -aGGUUGccGugCUUCGCcgugaaGGCGUCGUa -3'
miRNA:   3'- ugCCAACuaCugGAAGCG------CUGCGGCA- -5'
23999 5' -55.1 NC_005262.1 + 24576 0.67 0.690986
Target:  5'- uACGGUUGc-GAUCgcggcaagCGCGACGCuCGUg -3'
miRNA:   3'- -UGCCAACuaCUGGaa------GCGCUGCG-GCA- -5'
23999 5' -55.1 NC_005262.1 + 49461 0.68 0.669455
Target:  5'- cGCGG-UGAUGAaCgcgCGCGuCGCCGa -3'
miRNA:   3'- -UGCCaACUACUgGaa-GCGCuGCGGCa -5'
23999 5' -55.1 NC_005262.1 + 32879 0.68 0.658633
Target:  5'- aACGc--GAUGGCCggCGCGcCGCCGg -3'
miRNA:   3'- -UGCcaaCUACUGGaaGCGCuGCGGCa -5'
23999 5' -55.1 NC_005262.1 + 25827 0.68 0.647786
Target:  5'- aGCGGcUUGccGGCCUgCGCGAuCGCCu- -3'
miRNA:   3'- -UGCC-AACuaCUGGAaGCGCU-GCGGca -5'
23999 5' -55.1 NC_005262.1 + 52104 0.68 0.626062
Target:  5'- gACGGac---GACCUcgGCGACGCCGUg -3'
miRNA:   3'- -UGCCaacuaCUGGAagCGCUGCGGCA- -5'
23999 5' -55.1 NC_005262.1 + 51982 0.69 0.615203
Target:  5'- aGCGGUcGGUG-CCgUUCgGCGGCGUCGg -3'
miRNA:   3'- -UGCCAaCUACuGG-AAG-CGCUGCGGCa -5'
23999 5' -55.1 NC_005262.1 + 57401 0.69 0.615203
Target:  5'- gACGGUUGccGAUCUgcucgaUGCGGCGCuCGUu -3'
miRNA:   3'- -UGCCAACuaCUGGAa-----GCGCUGCG-GCA- -5'
23999 5' -55.1 NC_005262.1 + 61288 0.69 0.604358
Target:  5'- cCGGgc--UGACCUUCGUGAgGUCGUu -3'
miRNA:   3'- uGCCaacuACUGGAAGCGCUgCGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.