miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24000 5' -55 NC_005262.1 + 24804 0.71 0.483883
Target:  5'- aUCGCGAAGGGcaagcgcgAG-CUCgCGAUCGCgGCc -3'
miRNA:   3'- -AGCGUUUCCU--------UCaGAG-GCUGGCGgCG- -5'
24000 5' -55 NC_005262.1 + 24874 0.71 0.483883
Target:  5'- uUCGCGAugucGAAGUgCUcgcCCGGCuCGCCGCg -3'
miRNA:   3'- -AGCGUUuc--CUUCA-GA---GGCUG-GCGGCG- -5'
24000 5' -55 NC_005262.1 + 20606 0.71 0.473873
Target:  5'- -aGUggGGuGAGGUCgUCgCGAgCGCCGCg -3'
miRNA:   3'- agCGuuUC-CUUCAG-AG-GCUgGCGGCG- -5'
24000 5' -55 NC_005262.1 + 15862 0.7 0.57782
Target:  5'- cCGCcgaagauGAGGAAGUCgCCGGCCGgCa- -3'
miRNA:   3'- aGCGu------UUCCUUCAGaGGCUGGCgGcg -5'
24000 5' -55 NC_005262.1 + 42771 0.7 0.523832
Target:  5'- gUCGCGAcGGAcgGccagcccuacaucGUCUCCGGCgCGUCGCc -3'
miRNA:   3'- -AGCGUUuCCU--U-------------CAGAGGCUG-GCGGCG- -5'
24000 5' -55 NC_005262.1 + 57394 0.7 0.57782
Target:  5'- cUCGCu--GGAGaUCgagCUGACCGCCGa -3'
miRNA:   3'- -AGCGuuuCCUUcAGa--GGCUGGCGGCg -5'
24000 5' -55 NC_005262.1 + 34585 0.7 0.535332
Target:  5'- cUCGCA---GAAGUCg-CGcGCCGCCGCg -3'
miRNA:   3'- -AGCGUuucCUUCAGagGC-UGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 32247 0.7 0.567114
Target:  5'- cCGCcuucuGGAAGUCgauccacgugCCGcCCGCUGCg -3'
miRNA:   3'- aGCGuuu--CCUUCAGa---------GGCuGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 54415 0.7 0.545863
Target:  5'- gCGCAAGcucgcGGAGG-CgcaGGCCGCCGCg -3'
miRNA:   3'- aGCGUUU-----CCUUCaGaggCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 5297 0.69 0.588569
Target:  5'- aUCGUgcAGGAuacgcccucGGUCgcgCCGGCCGCgccCGCg -3'
miRNA:   3'- -AGCGuuUCCU---------UCAGa--GGCUGGCG---GCG- -5'
24000 5' -55 NC_005262.1 + 20863 0.69 0.598274
Target:  5'- aCGC--AGGcAGUCaacUCCGuuacccaGCCGCCGCa -3'
miRNA:   3'- aGCGuuUCCuUCAG---AGGC-------UGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 16191 0.69 0.610166
Target:  5'- gCGCcGAGGAAGUcCUUCaGGCCcgcGCCGUu -3'
miRNA:   3'- aGCGuUUCCUUCA-GAGG-CUGG---CGGCG- -5'
24000 5' -55 NC_005262.1 + 5167 0.68 0.642677
Target:  5'- cCGCcGAGccGGUCgcacgcgCCG-CCGCCGCg -3'
miRNA:   3'- aGCGuUUCcuUCAGa------GGCuGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 61558 0.68 0.675102
Target:  5'- gCGCGAAGauGucGUCUagcgcuucgCCGuCCGCCGCc -3'
miRNA:   3'- aGCGUUUC--CuuCAGA---------GGCuGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 5709 0.68 0.675102
Target:  5'- gCGCAAcucgGGcGAGGUCgcgaacaUCGacGCCGCCGCg -3'
miRNA:   3'- aGCGUU----UC-CUUCAGa------GGC--UGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 44881 0.68 0.675102
Target:  5'- gCGCuacAAGGAuGUgUUCCaGCCGCUGCa -3'
miRNA:   3'- aGCGu--UUCCUuCA-GAGGcUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 4337 0.68 0.675102
Target:  5'- cUCGC--GGGccGUCcaUCGGCCGUCGCg -3'
miRNA:   3'- -AGCGuuUCCuuCAGa-GGCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 33837 0.68 0.690129
Target:  5'- uUCGCu-GGGAGGUCcccgagCUGAUcgaguggaucaacgaCGCCGCg -3'
miRNA:   3'- -AGCGuuUCCUUCAGa-----GGCUG---------------GCGGCG- -5'
24000 5' -55 NC_005262.1 + 48613 0.68 0.674026
Target:  5'- aUCGCAgcucgacGAGGAGGagC-CCGGCCGCUuCa -3'
miRNA:   3'- -AGCGU-------UUCCUUCa-GaGGCUGGCGGcG- -5'
24000 5' -55 NC_005262.1 + 31469 0.67 0.707172
Target:  5'- cCGUAAAGcGuuGGUCcgCCGACCucGCCGUc -3'
miRNA:   3'- aGCGUUUC-Cu-UCAGa-GGCUGG--CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.