miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24000 5' -55 NC_005262.1 + 46530 0.66 0.76909
Target:  5'- gCGCAGcAGcccAGcgCggcgCCGGCCGCCGCu -3'
miRNA:   3'- aGCGUU-UCcu-UCa-Ga---GGCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 38497 0.66 0.759048
Target:  5'- gUCGUGAAGGuguGGcUCUCCGggggcACgGCCGg -3'
miRNA:   3'- -AGCGUUUCCu--UC-AGAGGC-----UGgCGGCg -5'
24000 5' -55 NC_005262.1 + 17152 0.66 0.759048
Target:  5'- gUCGCAAucgaGAAGg--CCGGCaagGCCGCg -3'
miRNA:   3'- -AGCGUUuc--CUUCagaGGCUGg--CGGCG- -5'
24000 5' -55 NC_005262.1 + 24390 0.66 0.758037
Target:  5'- aUCGCGAgaagcaucagggcGGcGAGcGUCgcgCCGAUUGCUGCg -3'
miRNA:   3'- -AGCGUU-------------UC-CUU-CAGa--GGCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 17189 0.67 0.748881
Target:  5'- gCGCGGuGGAccucCUCgCGGcCCGCCGCg -3'
miRNA:   3'- aGCGUUuCCUuca-GAG-GCU-GGCGGCG- -5'
24000 5' -55 NC_005262.1 + 59855 0.67 0.748881
Target:  5'- cUGCGAGcGGGAGacgaacgaUCCGACCguuugGCCGCc -3'
miRNA:   3'- aGCGUUU-CCUUCag------AGGCUGG-----CGGCG- -5'
24000 5' -55 NC_005262.1 + 28271 0.67 0.748881
Target:  5'- aCGUcuc-GAAGUUgucgaCGGCCGCCGCg -3'
miRNA:   3'- aGCGuuucCUUCAGag---GCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 18756 0.67 0.748881
Target:  5'- gCGCAAGGGcAAGaagagCUUCauGCCGCUGCu -3'
miRNA:   3'- aGCGUUUCC-UUCa----GAGGc-UGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 49820 0.67 0.738599
Target:  5'- -gGCGucGGugcGG-CUUCGGCCGCCGg -3'
miRNA:   3'- agCGUuuCCu--UCaGAGGCUGGCGGCg -5'
24000 5' -55 NC_005262.1 + 40808 0.67 0.717733
Target:  5'- gUGCucGAGGgcGUCagCG-CCGCCGUa -3'
miRNA:   3'- aGCGu-UUCCuuCAGagGCuGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 5861 0.67 0.717733
Target:  5'- gCGCAAGauGGccuGUUUCCgGAUgGCCGCg -3'
miRNA:   3'- aGCGUUU--CCuu-CAGAGG-CUGgCGGCG- -5'
24000 5' -55 NC_005262.1 + 31469 0.67 0.707172
Target:  5'- cCGUAAAGcGuuGGUCcgCCGACCucGCCGUc -3'
miRNA:   3'- aGCGUUUC-Cu-UCAGa-GGCUGG--CGGCG- -5'
24000 5' -55 NC_005262.1 + 33837 0.68 0.690129
Target:  5'- uUCGCu-GGGAGGUCcccgagCUGAUcgaguggaucaacgaCGCCGCg -3'
miRNA:   3'- -AGCGuuUCCUUCAGa-----GGCUG---------------GCGGCG- -5'
24000 5' -55 NC_005262.1 + 5709 0.68 0.675102
Target:  5'- gCGCAAcucgGGcGAGGUCgcgaacaUCGacGCCGCCGCg -3'
miRNA:   3'- aGCGUU----UC-CUUCAGa------GGC--UGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 44881 0.68 0.675102
Target:  5'- gCGCuacAAGGAuGUgUUCCaGCCGCUGCa -3'
miRNA:   3'- aGCGu--UUCCUuCA-GAGGcUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 4337 0.68 0.675102
Target:  5'- cUCGC--GGGccGUCcaUCGGCCGUCGCg -3'
miRNA:   3'- -AGCGuuUCCuuCAGa-GGCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 61558 0.68 0.675102
Target:  5'- gCGCGAAGauGucGUCUagcgcuucgCCGuCCGCCGCc -3'
miRNA:   3'- aGCGUUUC--CuuCAGA---------GGCuGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 48613 0.68 0.674026
Target:  5'- aUCGCAgcucgacGAGGAGGagC-CCGGCCGCUuCa -3'
miRNA:   3'- -AGCGU-------UUCCUUCa-GaGGCUGGCGGcG- -5'
24000 5' -55 NC_005262.1 + 5167 0.68 0.642677
Target:  5'- cCGCcGAGccGGUCgcacgcgCCG-CCGCCGCg -3'
miRNA:   3'- aGCGuUUCcuUCAGa------GGCuGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 16191 0.69 0.610166
Target:  5'- gCGCcGAGGAAGUcCUUCaGGCCcgcGCCGUu -3'
miRNA:   3'- aGCGuUUCCUUCA-GAGG-CUGG---CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.