miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24002 3' -53.3 NC_005262.1 + 20611 1.09 0.001942
Target:  5'- gCUGUUGCGUAGCCAAUCCGCCACACGu -3'
miRNA:   3'- -GACAACGCAUCGGUUAGGCGGUGUGC- -5'
24002 3' -53.3 NC_005262.1 + 23456 0.78 0.23751
Target:  5'- -cGUUGCG-GGCCuucgCCGCCGCGCGc -3'
miRNA:   3'- gaCAACGCaUCGGuua-GGCGGUGUGC- -5'
24002 3' -53.3 NC_005262.1 + 14141 0.72 0.49824
Target:  5'- gUGggaugGCGUGcGCCGggauuGUCCGCCGCGCc -3'
miRNA:   3'- gACaa---CGCAU-CGGU-----UAGGCGGUGUGc -5'
24002 3' -53.3 NC_005262.1 + 35799 0.69 0.683554
Target:  5'- ----aGCGUGGCCGucCCGCCgACGCc -3'
miRNA:   3'- gacaaCGCAUCGGUuaGGCGG-UGUGc -5'
24002 3' -53.3 NC_005262.1 + 13129 0.68 0.737512
Target:  5'- -----cCGUGGCacaauuaGGUCCGCCGCGCGc -3'
miRNA:   3'- gacaacGCAUCGg------UUAGGCGGUGUGC- -5'
24002 3' -53.3 NC_005262.1 + 19053 0.68 0.737512
Target:  5'- aUGUcgauUGCGaGGCCcuugacgCCGCCGCGCu -3'
miRNA:   3'- gACA----ACGCaUCGGuua----GGCGGUGUGc -5'
24002 3' -53.3 NC_005262.1 + 59214 0.68 0.748027
Target:  5'- ----cGCGgcccGGCCGGUUCGCCucgGCGCGg -3'
miRNA:   3'- gacaaCGCa---UCGGUUAGGCGG---UGUGC- -5'
24002 3' -53.3 NC_005262.1 + 50486 0.67 0.76869
Target:  5'- ----cGCGgcGCUGAU-CGCCGCGCGg -3'
miRNA:   3'- gacaaCGCauCGGUUAgGCGGUGUGC- -5'
24002 3' -53.3 NC_005262.1 + 51584 0.67 0.76869
Target:  5'- -cGUUGCG--GCCGAUCCGCUcgaucucguaggACugGc -3'
miRNA:   3'- gaCAACGCauCGGUUAGGCGG------------UGugC- -5'
24002 3' -53.3 NC_005262.1 + 62828 0.67 0.778813
Target:  5'- aUGcUGCGgcGCUGA-CCGCCAgCGCGc -3'
miRNA:   3'- gACaACGCauCGGUUaGGCGGU-GUGC- -5'
24002 3' -53.3 NC_005262.1 + 45089 0.67 0.788783
Target:  5'- gUGUUgGCGUccGCCGc-CUGCCGCGCGg -3'
miRNA:   3'- gACAA-CGCAu-CGGUuaGGCGGUGUGC- -5'
24002 3' -53.3 NC_005262.1 + 32868 0.67 0.808215
Target:  5'- ---gUGCGgcGCCGagcuGUUCGCCGCGuCGa -3'
miRNA:   3'- gacaACGCauCGGU----UAGGCGGUGU-GC- -5'
24002 3' -53.3 NC_005262.1 + 5642 0.67 0.808215
Target:  5'- ---gUGCGUGGUgaCGAUCCGCgcaucgaGCACGa -3'
miRNA:   3'- gacaACGCAUCG--GUUAGGCGg------UGUGC- -5'
24002 3' -53.3 NC_005262.1 + 54424 0.66 0.8269
Target:  5'- ----cGCGgaGGCgCAggCCGCCGCGCGc -3'
miRNA:   3'- gacaaCGCa-UCG-GUuaGGCGGUGUGC- -5'
24002 3' -53.3 NC_005262.1 + 15289 0.66 0.844755
Target:  5'- aUGcUGCcaGUcGUCGAUUCGCCGCGCa -3'
miRNA:   3'- gACaACG--CAuCGGUUAGGCGGUGUGc -5'
24002 3' -53.3 NC_005262.1 + 15405 0.66 0.844755
Target:  5'- gCUGUUGCucgacGGCCGc-CCGCCcauGCGCGg -3'
miRNA:   3'- -GACAACGca---UCGGUuaGGCGG---UGUGC- -5'
24002 3' -53.3 NC_005262.1 + 21681 0.66 0.844755
Target:  5'- cCUGagcgGCGgcGCCGcgCUGCUguACGCGg -3'
miRNA:   3'- -GACaa--CGCauCGGUuaGGCGG--UGUGC- -5'
24002 3' -53.3 NC_005262.1 + 35199 0.66 0.844755
Target:  5'- ----cGCGUGGCCAgccuacGUCCGCaaggAUGCGg -3'
miRNA:   3'- gacaaCGCAUCGGU------UAGGCGg---UGUGC- -5'
24002 3' -53.3 NC_005262.1 + 46544 0.66 0.844755
Target:  5'- ----cGCGgcGCCGG-CCGCCGCucccGCGa -3'
miRNA:   3'- gacaaCGCauCGGUUaGGCGGUG----UGC- -5'
24002 3' -53.3 NC_005262.1 + 28508 0.66 0.853348
Target:  5'- aUGUggGCGggcccgAGCCcGUaCCGCCACAa- -3'
miRNA:   3'- gACAa-CGCa-----UCGGuUA-GGCGGUGUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.