Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24002 | 3' | -53.3 | NC_005262.1 | + | 20611 | 1.09 | 0.001942 |
Target: 5'- gCUGUUGCGUAGCCAAUCCGCCACACGu -3' miRNA: 3'- -GACAACGCAUCGGUUAGGCGGUGUGC- -5' |
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24002 | 3' | -53.3 | NC_005262.1 | + | 49804 | 0.66 | 0.861707 |
Target: 5'- cCUGcacCGUccGGcCCGAUCgGCCGCGCGa -3' miRNA: 3'- -GACaacGCA--UC-GGUUAGgCGGUGUGC- -5' |
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24002 | 3' | -53.3 | NC_005262.1 | + | 49155 | 0.66 | 0.861707 |
Target: 5'- -gGUggGCGUgcaGGCCGcAUCgGCCGCAgCGg -3' miRNA: 3'- gaCAa-CGCA---UCGGU-UAGgCGGUGU-GC- -5' |
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24002 | 3' | -53.3 | NC_005262.1 | + | 19093 | 0.66 | 0.861707 |
Target: 5'- aCUGaUGC--AGCCAcgCCGUCACcaACGg -3' miRNA: 3'- -GACaACGcaUCGGUuaGGCGGUG--UGC- -5' |
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24002 | 3' | -53.3 | NC_005262.1 | + | 28508 | 0.66 | 0.853348 |
Target: 5'- aUGUggGCGggcccgAGCCcGUaCCGCCACAa- -3' miRNA: 3'- gACAa-CGCa-----UCGGuUA-GGCGGUGUgc -5' |
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24002 | 3' | -53.3 | NC_005262.1 | + | 15289 | 0.66 | 0.844755 |
Target: 5'- aUGcUGCcaGUcGUCGAUUCGCCGCGCa -3' miRNA: 3'- gACaACG--CAuCGGUUAGGCGGUGUGc -5' |
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24002 | 3' | -53.3 | NC_005262.1 | + | 46544 | 0.66 | 0.844755 |
Target: 5'- ----cGCGgcGCCGG-CCGCCGCucccGCGa -3' miRNA: 3'- gacaaCGCauCGGUUaGGCGGUG----UGC- -5' |
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24002 | 3' | -53.3 | NC_005262.1 | + | 35199 | 0.66 | 0.844755 |
Target: 5'- ----cGCGUGGCCAgccuacGUCCGCaaggAUGCGg -3' miRNA: 3'- gacaaCGCAUCGGU------UAGGCGg---UGUGC- -5' |
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24002 | 3' | -53.3 | NC_005262.1 | + | 21681 | 0.66 | 0.844755 |
Target: 5'- cCUGagcgGCGgcGCCGcgCUGCUguACGCGg -3' miRNA: 3'- -GACaa--CGCauCGGUuaGGCGG--UGUGC- -5' |
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24002 | 3' | -53.3 | NC_005262.1 | + | 54424 | 0.66 | 0.8269 |
Target: 5'- ----cGCGgaGGCgCAggCCGCCGCGCGc -3' miRNA: 3'- gacaaCGCa-UCG-GUuaGGCGGUGUGC- -5' |
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24002 | 3' | -53.3 | NC_005262.1 | + | 32868 | 0.67 | 0.808215 |
Target: 5'- ---gUGCGgcGCCGagcuGUUCGCCGCGuCGa -3' miRNA: 3'- gacaACGCauCGGU----UAGGCGGUGU-GC- -5' |
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24002 | 3' | -53.3 | NC_005262.1 | + | 19053 | 0.68 | 0.737512 |
Target: 5'- aUGUcgauUGCGaGGCCcuugacgCCGCCGCGCu -3' miRNA: 3'- gACA----ACGCaUCGGuua----GGCGGUGUGc -5' |
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24002 | 3' | -53.3 | NC_005262.1 | + | 13129 | 0.68 | 0.737512 |
Target: 5'- -----cCGUGGCacaauuaGGUCCGCCGCGCGc -3' miRNA: 3'- gacaacGCAUCGg------UUAGGCGGUGUGC- -5' |
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24002 | 3' | -53.3 | NC_005262.1 | + | 14141 | 0.72 | 0.49824 |
Target: 5'- gUGggaugGCGUGcGCCGggauuGUCCGCCGCGCc -3' miRNA: 3'- gACaa---CGCAU-CGGU-----UAGGCGGUGUGc -5' |
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24002 | 3' | -53.3 | NC_005262.1 | + | 50486 | 0.67 | 0.76869 |
Target: 5'- ----cGCGgcGCUGAU-CGCCGCGCGg -3' miRNA: 3'- gacaaCGCauCGGUUAgGCGGUGUGC- -5' |
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24002 | 3' | -53.3 | NC_005262.1 | + | 62828 | 0.67 | 0.778813 |
Target: 5'- aUGcUGCGgcGCUGA-CCGCCAgCGCGc -3' miRNA: 3'- gACaACGCauCGGUUaGGCGGU-GUGC- -5' |
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24002 | 3' | -53.3 | NC_005262.1 | + | 45089 | 0.67 | 0.788783 |
Target: 5'- gUGUUgGCGUccGCCGc-CUGCCGCGCGg -3' miRNA: 3'- gACAA-CGCAu-CGGUuaGGCGGUGUGC- -5' |
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24002 | 3' | -53.3 | NC_005262.1 | + | 5642 | 0.67 | 0.808215 |
Target: 5'- ---gUGCGUGGUgaCGAUCCGCgcaucgaGCACGa -3' miRNA: 3'- gacaACGCAUCG--GUUAGGCGg------UGUGC- -5' |
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24002 | 3' | -53.3 | NC_005262.1 | + | 15405 | 0.66 | 0.844755 |
Target: 5'- gCUGUUGCucgacGGCCGc-CCGCCcauGCGCGg -3' miRNA: 3'- -GACAACGca---UCGGUuaGGCGG---UGUGC- -5' |
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24002 | 3' | -53.3 | NC_005262.1 | + | 23456 | 0.78 | 0.23751 |
Target: 5'- -cGUUGCG-GGCCuucgCCGCCGCGCGc -3' miRNA: 3'- gaCAACGCaUCGGuua-GGCGGUGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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