miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24002 5' -62.6 NC_005262.1 + 48166 0.66 0.399813
Target:  5'- cGUCGG-CGCcgGgCGGCUCgUCGCGGc -3'
miRNA:   3'- -CGGCCgGCGa-CgGCCGAGgAGUGUCu -5'
24002 5' -62.6 NC_005262.1 + 59389 0.66 0.399813
Target:  5'- cCCGaGCCGCcGuCCGGCaugUCCUCGuuGAu -3'
miRNA:   3'- cGGC-CGGCGaC-GGCCG---AGGAGUguCU- -5'
24002 5' -62.6 NC_005262.1 + 43614 0.66 0.399813
Target:  5'- cGCaGGUgaCGCUcGCCGGCaCCggCGCAGAa -3'
miRNA:   3'- -CGgCCG--GCGA-CGGCCGaGGa-GUGUCU- -5'
24002 5' -62.6 NC_005262.1 + 57508 0.66 0.391199
Target:  5'- uGCCGGagCGUUGUCGGCcgCCUUcucgGCGGu -3'
miRNA:   3'- -CGGCCg-GCGACGGCCGa-GGAG----UGUCu -5'
24002 5' -62.6 NC_005262.1 + 10571 0.66 0.391199
Target:  5'- uGCUGGCgcUGCUGCUGGUcgccgcugUCgUCGCGGc -3'
miRNA:   3'- -CGGCCG--GCGACGGCCG--------AGgAGUGUCu -5'
24002 5' -62.6 NC_005262.1 + 50320 0.66 0.391199
Target:  5'- aGCCGGCCGCagcGCCcGC-Cg-CGCAGGa -3'
miRNA:   3'- -CGGCCGGCGa--CGGcCGaGgaGUGUCU- -5'
24002 5' -62.6 NC_005262.1 + 3681 0.66 0.391199
Target:  5'- cGCUGGCCGUgacgacggugaUGCCGGCgCCg-ACAa- -3'
miRNA:   3'- -CGGCCGGCG-----------ACGGCCGaGGagUGUcu -5'
24002 5' -62.6 NC_005262.1 + 8342 0.66 0.382708
Target:  5'- cUCGGCCGCUGCuuucgcgcgcuCGGCUUCgagcuUCGCcGAc -3'
miRNA:   3'- cGGCCGGCGACG-----------GCCGAGG-----AGUGuCU- -5'
24002 5' -62.6 NC_005262.1 + 63292 0.66 0.382708
Target:  5'- gGCCGGCUGCUgGCuCGGCgUCgaCGUGGAa -3'
miRNA:   3'- -CGGCCGGCGA-CG-GCCG-AGgaGUGUCU- -5'
24002 5' -62.6 NC_005262.1 + 50000 0.66 0.374341
Target:  5'- cGCCGaugaaGCCGC-GCCGGCgCC-CACcGAa -3'
miRNA:   3'- -CGGC-----CGGCGaCGGCCGaGGaGUGuCU- -5'
24002 5' -62.6 NC_005262.1 + 27659 0.66 0.374341
Target:  5'- gGCaGGCuucucgCGCUGCgCGGCgUCCUCGcCGGGg -3'
miRNA:   3'- -CGgCCG------GCGACG-GCCG-AGGAGU-GUCU- -5'
24002 5' -62.6 NC_005262.1 + 26629 0.66 0.374341
Target:  5'- cGUCGGCCGCUucggaguggccGCCGG-UCUUguCGGGc -3'
miRNA:   3'- -CGGCCGGCGA-----------CGGCCgAGGAguGUCU- -5'
24002 5' -62.6 NC_005262.1 + 63374 0.66 0.366097
Target:  5'- cGCCGaGCCaGCaGCCGGC-CgUCaaGCAGGc -3'
miRNA:   3'- -CGGC-CGG-CGaCGGCCGaGgAG--UGUCU- -5'
24002 5' -62.6 NC_005262.1 + 32419 0.66 0.35798
Target:  5'- aGCCcGCCaucGCUGCCGGUUUCaUCGCcGGc -3'
miRNA:   3'- -CGGcCGG---CGACGGCCGAGG-AGUGuCU- -5'
24002 5' -62.6 NC_005262.1 + 10795 0.66 0.35798
Target:  5'- cGCCGGCCGCgUG-CGcGCggCCUCgaucugcgcauGCAGGa -3'
miRNA:   3'- -CGGCCGGCG-ACgGC-CGa-GGAG-----------UGUCU- -5'
24002 5' -62.6 NC_005262.1 + 22581 0.67 0.349198
Target:  5'- -gCGGCCGCaUGCgCGGCgcugCUcaacuacaucgaaUCGCAGAu -3'
miRNA:   3'- cgGCCGGCG-ACG-GCCGa---GG-------------AGUGUCU- -5'
24002 5' -62.6 NC_005262.1 + 62977 0.67 0.347618
Target:  5'- cGUCGGCgCGCUgGCgGGUgauggugucgcccaUCUUCACGGGc -3'
miRNA:   3'- -CGGCCG-GCGA-CGgCCG--------------AGGAGUGUCU- -5'
24002 5' -62.6 NC_005262.1 + 20435 0.67 0.342128
Target:  5'- cCCGGCCGUUcuuCUGGCUCU--GCGGAa -3'
miRNA:   3'- cGGCCGGCGAc--GGCCGAGGagUGUCU- -5'
24002 5' -62.6 NC_005262.1 + 37345 0.67 0.334394
Target:  5'- gGCuCGGCCGUUGUucgugCGGUUCa-CGCGGAa -3'
miRNA:   3'- -CG-GCCGGCGACG-----GCCGAGgaGUGUCU- -5'
24002 5' -62.6 NC_005262.1 + 51290 0.67 0.334394
Target:  5'- cGCCGGCUGCUGCgCaugccGCUCgaC-CAGAu -3'
miRNA:   3'- -CGGCCGGCGACG-Gc----CGAGgaGuGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.