miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24003 3' -52.5 NC_005262.1 + 51405 0.66 0.898628
Target:  5'- uUGC-CGCGCGCGgaugCgcCCAUcugGUCGAg -3'
miRNA:   3'- cGCGuGCGCGCGUa---GaaGGUA---UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 35462 0.66 0.898628
Target:  5'- aGCGcCGCGUGCGCcagcauaUUUCCGccgGUCGGu -3'
miRNA:   3'- -CGC-GUGCGCGCGua-----GAAGGUa--UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 13227 0.66 0.898628
Target:  5'- cGCGCAgCGCGCGCGgcggaccuaaUUgugCCAcgguUCGAa -3'
miRNA:   3'- -CGCGU-GCGCGCGU----------AGaa-GGUau--AGCU- -5'
24003 3' -52.5 NC_005262.1 + 38027 0.66 0.891501
Target:  5'- gGCGUugGCGuCGCGg--UCCAUG-CGc -3'
miRNA:   3'- -CGCGugCGC-GCGUagaAGGUAUaGCu -5'
24003 3' -52.5 NC_005262.1 + 17220 0.66 0.891501
Target:  5'- uGCG-ACGCGCGCGUUcuuguggUCCAUcgCc- -3'
miRNA:   3'- -CGCgUGCGCGCGUAGa------AGGUAuaGcu -5'
24003 3' -52.5 NC_005262.1 + 13006 0.66 0.891501
Target:  5'- aGCGCGC-CGCGCAgguugUCGUGUCc- -3'
miRNA:   3'- -CGCGUGcGCGCGUagaa-GGUAUAGcu -5'
24003 3' -52.5 NC_005262.1 + 23441 0.66 0.884107
Target:  5'- cCGC-CGCGCGCuUCacgCCGgccgugGUCGAg -3'
miRNA:   3'- cGCGuGCGCGCGuAGaa-GGUa-----UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 10949 0.66 0.884107
Target:  5'- cGCGCuACGCGCaGCAggcaUUCgCGcUGUCGGc -3'
miRNA:   3'- -CGCG-UGCGCG-CGUag--AAG-GU-AUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 6246 0.66 0.884107
Target:  5'- cCGC-CGCGCGCAcggUCUuugCCGccUCGAu -3'
miRNA:   3'- cGCGuGCGCGCGU---AGAa--GGUauAGCU- -5'
24003 3' -52.5 NC_005262.1 + 34161 0.66 0.884107
Target:  5'- cGCGCGCGCG-GCGUgCcagUCCGgguucuggucGUCGAg -3'
miRNA:   3'- -CGCGUGCGCgCGUA-Ga--AGGUa---------UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 57761 0.66 0.884107
Target:  5'- cGCGCccgGCGCGCGagaaGUCgaucgugCCGccgAUCGAg -3'
miRNA:   3'- -CGCG---UGCGCGCg---UAGaa-----GGUa--UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 53647 0.66 0.884107
Target:  5'- -aGCGCGUGCGCGcCgagcaCCAUcUCGGg -3'
miRNA:   3'- cgCGUGCGCGCGUaGaa---GGUAuAGCU- -5'
24003 3' -52.5 NC_005262.1 + 15787 0.66 0.884107
Target:  5'- aGCGCAUaGCGCuGC-UCgUCCGUcUCGGc -3'
miRNA:   3'- -CGCGUG-CGCG-CGuAGaAGGUAuAGCU- -5'
24003 3' -52.5 NC_005262.1 + 36465 0.66 0.876451
Target:  5'- gGCGCauggGCGCGCGCGaggCUggcggaCAUcgCGAa -3'
miRNA:   3'- -CGCG----UGCGCGCGUa--GAag----GUAuaGCU- -5'
24003 3' -52.5 NC_005262.1 + 31852 0.66 0.868539
Target:  5'- gGUGCACGCG-GCAUCaaCCucgacuucAUCGAa -3'
miRNA:   3'- -CGCGUGCGCgCGUAGaaGGua------UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 5794 0.66 0.868539
Target:  5'- uGCGC-CGCGCGCAUgcaCgcgUUCAUGagGGa -3'
miRNA:   3'- -CGCGuGCGCGCGUA---Ga--AGGUAUagCU- -5'
24003 3' -52.5 NC_005262.1 + 39914 0.67 0.860378
Target:  5'- cUGCuggauCGCGCGCAUCgcgUCCA--UCa- -3'
miRNA:   3'- cGCGu----GCGCGCGUAGa--AGGUauAGcu -5'
24003 3' -52.5 NC_005262.1 + 51323 0.67 0.860378
Target:  5'- gGCGCAucCGCGCGCGgcaagaucgaaUCcgCCAUGcagcUCGGc -3'
miRNA:   3'- -CGCGU--GCGCGCGU-----------AGaaGGUAU----AGCU- -5'
24003 3' -52.5 NC_005262.1 + 51782 0.67 0.860378
Target:  5'- cGCGCACGaaCGCGC-UCaca-GUGUCGAu -3'
miRNA:   3'- -CGCGUGC--GCGCGuAGaaggUAUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 45675 0.67 0.856207
Target:  5'- aGCGCAuggugccgcacuuCGUGCGCAUCgagggCCGgcagccggccgugAUCGAg -3'
miRNA:   3'- -CGCGU-------------GCGCGCGUAGaa---GGUa------------UAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.