Results 41 - 60 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24003 | 3' | -52.5 | NC_005262.1 | + | 15590 | 0.68 | 0.787133 |
Target: 5'- gGCGCGCGCGCGCGaggagCgCGUG-CGGc -3' miRNA: 3'- -CGCGUGCGCGCGUagaa-G-GUAUaGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 17490 | 0.68 | 0.787133 |
Target: 5'- aGCGCGCGcCGCGCG-Cga-CGcGUCGAu -3' miRNA: 3'- -CGCGUGC-GCGCGUaGaagGUaUAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 13385 | 0.68 | 0.787133 |
Target: 5'- uGCGCcuggGCGCGCGCAUCcacgagcUCCg---CGAg -3' miRNA: 3'- -CGCG----UGCGCGCGUAGa------AGGuauaGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 33880 | 0.68 | 0.805679 |
Target: 5'- cGCGCGCGagacgauCGUGCGUCggCCGgcggcccgAUCGGu -3' miRNA: 3'- -CGCGUGC-------GCGCGUAGaaGGUa-------UAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 30832 | 0.68 | 0.806637 |
Target: 5'- cGCGUcucgGCGaCGCGCAUCgUCgAcGUCGGg -3' miRNA: 3'- -CGCG----UGC-GCGCGUAGaAGgUaUAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 28168 | 0.68 | 0.806637 |
Target: 5'- gGCGCAacUGCGCGCggCggCC--GUCGAc -3' miRNA: 3'- -CGCGU--GCGCGCGuaGaaGGuaUAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 36219 | 0.69 | 0.746252 |
Target: 5'- cGCGCugGCgGUGC-UCgccucgCCGUAUCGc -3' miRNA: 3'- -CGCGugCG-CGCGuAGaa----GGUAUAGCu -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 28422 | 0.69 | 0.746252 |
Target: 5'- cGCuGCACGCGCacggGCAUCcggaaCCAUGccUCGAu -3' miRNA: 3'- -CG-CGUGCGCG----CGUAGaa---GGUAU--AGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 17567 | 0.69 | 0.746252 |
Target: 5'- cGCGCgGCGCGCGCuUCgUCCuggaacUCGGc -3' miRNA: 3'- -CGCG-UGCGCGCGuAGaAGGuau---AGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 20860 | 0.69 | 0.756678 |
Target: 5'- uGCGCGCGUGCGCgAUCU--CGUGgcgcugggguUCGAc -3' miRNA: 3'- -CGCGUGCGCGCG-UAGAagGUAU----------AGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 13556 | 0.69 | 0.756678 |
Target: 5'- cGCGCgACGCGCGCGggCUUCgCGcccuugCGAc -3' miRNA: 3'- -CGCG-UGCGCGCGUa-GAAG-GUaua---GCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 35871 | 0.69 | 0.732526 |
Target: 5'- uGCGCggcgACGCGCGCAccuaucggcUCaUCCAcggggccggcacagUGUCGAu -3' miRNA: 3'- -CGCG----UGCGCGCGU---------AGaAGGU--------------AUAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 35948 | 0.69 | 0.756678 |
Target: 5'- cGCGCGuCGCGCGCAcaaacaUCUgggCgGUcgCGGc -3' miRNA: 3'- -CGCGU-GCGCGCGU------AGAa--GgUAuaGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 26648 | 0.69 | 0.725062 |
Target: 5'- uGCGCgaacugGCGCaGCGCGUCggCCGcuUCGGa -3' miRNA: 3'- -CGCG------UGCG-CGCGUAGaaGGUauAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 13768 | 0.69 | 0.713241 |
Target: 5'- cGCGCcagcaccGCGCGCGUgAUCUUCguCAUGUCu- -3' miRNA: 3'- -CGCG-------UGCGCGCG-UAGAAG--GUAUAGcu -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 21833 | 0.69 | 0.73571 |
Target: 5'- cGUGC-CGCuGCGCgAUCUUCCGUGagcgccUUGAg -3' miRNA: 3'- -CGCGuGCG-CGCG-UAGAAGGUAU------AGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 44243 | 0.69 | 0.73571 |
Target: 5'- cGCGCuccugcccgaucGCGCGCGCGUCcggCCGgaacgCGGg -3' miRNA: 3'- -CGCG------------UGCGCGCGUAGaa-GGUaua--GCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 33950 | 0.7 | 0.692601 |
Target: 5'- uCGCGCGCGCGUcgUUgaUCCAc-UCGAu -3' miRNA: 3'- cGCGUGCGCGCGuaGA--AGGUauAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 56844 | 0.7 | 0.670645 |
Target: 5'- aGCGCucgucgcccgACGCcaGCGCggCggCCAUGUCGAa -3' miRNA: 3'- -CGCG----------UGCG--CGCGuaGaaGGUAUAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 52042 | 0.7 | 0.707834 |
Target: 5'- aGCGCAgGCGCGCGcgagcggccuccaccUUgUCCGUcgUGAa -3' miRNA: 3'- -CGCGUgCGCGCGU---------------AGaAGGUAuaGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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