miRNA display CGI


Results 1 - 20 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24003 3' -52.5 NC_005262.1 + 20784 1.12 0.001466
Target:  5'- cGCGCACGCGCGCAUCUUCCAUAUCGAg -3'
miRNA:   3'- -CGCGUGCGCGCGUAGAAGGUAUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 34132 0.81 0.19083
Target:  5'- cGCGCAC-CGCGCAUCUUCUAcGUCu- -3'
miRNA:   3'- -CGCGUGcGCGCGUAGAAGGUaUAGcu -5'
24003 3' -52.5 NC_005262.1 + 63403 0.8 0.212482
Target:  5'- gGCGaCGCgGCGCGCGUgUUCCAcGUCGAc -3'
miRNA:   3'- -CGC-GUG-CGCGCGUAgAAGGUaUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 4555 0.78 0.283046
Target:  5'- uGCGCGCGCgGCGCAUCUcgcgCCAg--CGGc -3'
miRNA:   3'- -CGCGUGCG-CGCGUAGAa---GGUauaGCU- -5'
24003 3' -52.5 NC_005262.1 + 61693 0.76 0.345215
Target:  5'- -gGCGCGCGCGCuUCUgCUcgGUCGAg -3'
miRNA:   3'- cgCGUGCGCGCGuAGAaGGuaUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 54887 0.76 0.370929
Target:  5'- aCGC-CGCGCGCAUCUUCUGcg-CGAc -3'
miRNA:   3'- cGCGuGCGCGCGUAGAAGGUauaGCU- -5'
24003 3' -52.5 NC_005262.1 + 15972 0.75 0.397919
Target:  5'- cGCGCACGCgGCGgAUCagcgCCAUcgcGUCGAg -3'
miRNA:   3'- -CGCGUGCG-CGCgUAGaa--GGUA---UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 10340 0.74 0.445597
Target:  5'- uGCGCAaGgGCGCAUCUgUCUAcAUCGAg -3'
miRNA:   3'- -CGCGUgCgCGCGUAGA-AGGUaUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 62945 0.74 0.445597
Target:  5'- aGCGCgauuuGCGCGCGUcgCUUCCGgc-CGAc -3'
miRNA:   3'- -CGCG-----UGCGCGCGuaGAAGGUauaGCU- -5'
24003 3' -52.5 NC_005262.1 + 12733 0.73 0.496301
Target:  5'- cGCGcCGCGCGCGCuUCUUCUucacgGUGcCGAg -3'
miRNA:   3'- -CGC-GUGCGCGCGuAGAAGG-----UAUaGCU- -5'
24003 3' -52.5 NC_005262.1 + 13465 0.73 0.516249
Target:  5'- uGCGCGCGCccagGCGCAggaUUCCGUGcuggcgcagcgcuUCGAg -3'
miRNA:   3'- -CGCGUGCG----CGCGUag-AAGGUAU-------------AGCU- -5'
24003 3' -52.5 NC_005262.1 + 33249 0.73 0.517308
Target:  5'- cGCGCACGuCGaGCG-CUUCC-UGUCGAu -3'
miRNA:   3'- -CGCGUGC-GCgCGUaGAAGGuAUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 3174 0.72 0.538661
Target:  5'- uGCGCAggucgccaauCGCGCGCAUCU----UGUCGAa -3'
miRNA:   3'- -CGCGU----------GCGCGCGUAGAagguAUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 25020 0.72 0.582185
Target:  5'- cGCGCggccAUGUGCGCAUCccgCCAUGccUCGGc -3'
miRNA:   3'- -CGCG----UGCGCGCGUAGaa-GGUAU--AGCU- -5'
24003 3' -52.5 NC_005262.1 + 22998 0.72 0.593192
Target:  5'- gGCGaGCGCGUaGCAgUCUUCCGcgAUCGAg -3'
miRNA:   3'- -CGCgUGCGCG-CGU-AGAAGGUa-UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 15666 0.71 0.637462
Target:  5'- cGCGCGCGCGCGCc---UCCAgcUCc- -3'
miRNA:   3'- -CGCGUGCGCGCGuagaAGGUauAGcu -5'
24003 3' -52.5 NC_005262.1 + 56844 0.7 0.670645
Target:  5'- aGCGCucgucgcccgACGCcaGCGCggCggCCAUGUCGAa -3'
miRNA:   3'- -CGCG----------UGCG--CGCGuaGaaGGUAUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 33950 0.7 0.692601
Target:  5'- uCGCGCGCGCGUcgUUgaUCCAc-UCGAu -3'
miRNA:   3'- cGCGUGCGCGCGuaGA--AGGUauAGCU- -5'
24003 3' -52.5 NC_005262.1 + 52042 0.7 0.707834
Target:  5'- aGCGCAgGCGCGCGcgagcggccuccaccUUgUCCGUcgUGAa -3'
miRNA:   3'- -CGCGUgCGCGCGU---------------AGaAGGUAuaGCU- -5'
24003 3' -52.5 NC_005262.1 + 13768 0.69 0.713241
Target:  5'- cGCGCcagcaccGCGCGCGUgAUCUUCguCAUGUCu- -3'
miRNA:   3'- -CGCG-------UGCGCGCG-UAGAAG--GUAUAGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.