miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24003 3' -52.5 NC_005262.1 + 26648 0.69 0.725062
Target:  5'- uGCGCgaacugGCGCaGCGCGUCggCCGcuUCGGa -3'
miRNA:   3'- -CGCG------UGCG-CGCGUAGaaGGUauAGCU- -5'
24003 3' -52.5 NC_005262.1 + 35871 0.69 0.732526
Target:  5'- uGCGCggcgACGCGCGCAccuaucggcUCaUCCAcggggccggcacagUGUCGAu -3'
miRNA:   3'- -CGCG----UGCGCGCGU---------AGaAGGU--------------AUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 21833 0.69 0.73571
Target:  5'- cGUGC-CGCuGCGCgAUCUUCCGUGagcgccUUGAg -3'
miRNA:   3'- -CGCGuGCG-CGCG-UAGAAGGUAU------AGCU- -5'
24003 3' -52.5 NC_005262.1 + 44243 0.69 0.73571
Target:  5'- cGCGCuccugcccgaucGCGCGCGCGUCcggCCGgaacgCGGg -3'
miRNA:   3'- -CGCG------------UGCGCGCGUAGaa-GGUaua--GCU- -5'
24003 3' -52.5 NC_005262.1 + 17567 0.69 0.746252
Target:  5'- cGCGCgGCGCGCGCuUCgUCCuggaacUCGGc -3'
miRNA:   3'- -CGCG-UGCGCGCGuAGaAGGuau---AGCU- -5'
24003 3' -52.5 NC_005262.1 + 36219 0.69 0.746252
Target:  5'- cGCGCugGCgGUGC-UCgccucgCCGUAUCGc -3'
miRNA:   3'- -CGCGugCG-CGCGuAGaa----GGUAUAGCu -5'
24003 3' -52.5 NC_005262.1 + 28422 0.69 0.746252
Target:  5'- cGCuGCACGCGCacggGCAUCcggaaCCAUGccUCGAu -3'
miRNA:   3'- -CG-CGUGCGCG----CGUAGaa---GGUAU--AGCU- -5'
24003 3' -52.5 NC_005262.1 + 13556 0.69 0.756678
Target:  5'- cGCGCgACGCGCGCGggCUUCgCGcccuugCGAc -3'
miRNA:   3'- -CGCG-UGCGCGCGUa-GAAG-GUaua---GCU- -5'
24003 3' -52.5 NC_005262.1 + 20860 0.69 0.756678
Target:  5'- uGCGCGCGUGCGCgAUCU--CGUGgcgcugggguUCGAc -3'
miRNA:   3'- -CGCGUGCGCGCG-UAGAagGUAU----------AGCU- -5'
24003 3' -52.5 NC_005262.1 + 35948 0.69 0.756678
Target:  5'- cGCGCGuCGCGCGCAcaaacaUCUgggCgGUcgCGGc -3'
miRNA:   3'- -CGCGU-GCGCGCGU------AGAa--GgUAuaGCU- -5'
24003 3' -52.5 NC_005262.1 + 33328 0.68 0.777129
Target:  5'- aGCGCucgACGUGCGCGUCgaugUUgAcGUCGGc -3'
miRNA:   3'- -CGCG---UGCGCGCGUAGa---AGgUaUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 55947 0.68 0.777129
Target:  5'- aGCGCACGCgGCGCAUCagC----UCGGg -3'
miRNA:   3'- -CGCGUGCG-CGCGUAGaaGguauAGCU- -5'
24003 3' -52.5 NC_005262.1 + 15590 0.68 0.787133
Target:  5'- gGCGCGCGCGCGCGaggagCgCGUG-CGGc -3'
miRNA:   3'- -CGCGUGCGCGCGUagaa-G-GUAUaGCU- -5'
24003 3' -52.5 NC_005262.1 + 13385 0.68 0.787133
Target:  5'- uGCGCcuggGCGCGCGCAUCcacgagcUCCg---CGAg -3'
miRNA:   3'- -CGCG----UGCGCGCGUAGa------AGGuauaGCU- -5'
24003 3' -52.5 NC_005262.1 + 23687 0.68 0.787133
Target:  5'- aGCgGCGCGUGUGgGUCUaCCGgcgcacgGUCGAc -3'
miRNA:   3'- -CG-CGUGCGCGCgUAGAaGGUa------UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 17490 0.68 0.787133
Target:  5'- aGCGCGCGcCGCGCG-Cga-CGcGUCGAu -3'
miRNA:   3'- -CGCGUGC-GCGCGUaGaagGUaUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 43920 0.68 0.796972
Target:  5'- cCGC-CGCGCGCGgccggcccgCggCCGUGUCGc -3'
miRNA:   3'- cGCGuGCGCGCGUa--------GaaGGUAUAGCu -5'
24003 3' -52.5 NC_005262.1 + 33880 0.68 0.805679
Target:  5'- cGCGCGCGagacgauCGUGCGUCggCCGgcggcccgAUCGGu -3'
miRNA:   3'- -CGCGUGC-------GCGCGUAGaaGGUa-------UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 28168 0.68 0.806637
Target:  5'- gGCGCAacUGCGCGCggCggCC--GUCGAc -3'
miRNA:   3'- -CGCGU--GCGCGCGuaGaaGGuaUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 30832 0.68 0.806637
Target:  5'- cGCGUcucgGCGaCGCGCAUCgUCgAcGUCGGg -3'
miRNA:   3'- -CGCG----UGC-GCGCGUAGaAGgUaUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.