Results 41 - 60 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24003 | 3' | -52.5 | NC_005262.1 | + | 43528 | 0.68 | 0.816117 |
Target: 5'- cCGCACaaGCGCGUCg-CCGUcgAUCGGa -3' miRNA: 3'- cGCGUGcgCGCGUAGaaGGUA--UAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 49458 | 0.68 | 0.816117 |
Target: 5'- gGUGaugaACGCGCGCGUCg-CCGaGUCGu -3' miRNA: 3'- -CGCg---UGCGCGCGUAGaaGGUaUAGCu -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 54921 | 0.67 | 0.8254 |
Target: 5'- -gGCGCGCuGCGUGUCggUCCAauccAUCGGc -3' miRNA: 3'- cgCGUGCG-CGCGUAGa-AGGUa---UAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 33296 | 0.67 | 0.8254 |
Target: 5'- cGCGCACGCcggGCGCcgaagCCGUcgaGUCGGa -3' miRNA: 3'- -CGCGUGCG---CGCGuagaaGGUA---UAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 23572 | 0.67 | 0.8254 |
Target: 5'- cGCGCGCGgGCGCAggagaucgCCGUGaaaacCGAg -3' miRNA: 3'- -CGCGUGCgCGCGUagaa----GGUAUa----GCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 50483 | 0.67 | 0.834478 |
Target: 5'- gGCGCugaucgcCGCGCGguUCgcgucgCCAcgGUCGAc -3' miRNA: 3'- -CGCGu------GCGCGCguAGaa----GGUa-UAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 48192 | 0.67 | 0.834478 |
Target: 5'- uGCGCGCG-GCGCGUCacaUCAUcgcgcGUCGGc -3' miRNA: 3'- -CGCGUGCgCGCGUAGaa-GGUA-----UAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 12022 | 0.67 | 0.843339 |
Target: 5'- -aGCGCGUGCGCcAUgUUCCcgA-CGAu -3' miRNA: 3'- cgCGUGCGCGCG-UAgAAGGuaUaGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 48117 | 0.67 | 0.843339 |
Target: 5'- cGCGC-CGCGCGCAagagCU-CgGcGUCGAu -3' miRNA: 3'- -CGCGuGCGCGCGUa---GAaGgUaUAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 62029 | 0.67 | 0.843339 |
Target: 5'- uCGC-CGCGCGCgAUCcUCCuccUCGAu -3' miRNA: 3'- cGCGuGCGCGCG-UAGaAGGuauAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 24731 | 0.67 | 0.843339 |
Target: 5'- cGCGCugGCGCGCGcgaUCgg-CGUG-CGGc -3' miRNA: 3'- -CGCGugCGCGCGU---AGaagGUAUaGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 50350 | 0.67 | 0.851976 |
Target: 5'- gGCGCGgGCGCGCccUCgUUgCGgcgGUCGAu -3' miRNA: 3'- -CGCGUgCGCGCGu-AG-AAgGUa--UAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 43875 | 0.67 | 0.851976 |
Target: 5'- gGCGCGauCGCGCGCAUgg-CCGacaugaaGUCGAa -3' miRNA: 3'- -CGCGU--GCGCGCGUAgaaGGUa------UAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 12524 | 0.67 | 0.851976 |
Target: 5'- cCGCGCGaCGCG-AUCgccUCCAUGUUGc -3' miRNA: 3'- cGCGUGC-GCGCgUAGa--AGGUAUAGCu -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 39728 | 0.67 | 0.851976 |
Target: 5'- cGCGCagcagGCGCaGCGCAUCaaccCCAacuggAUCGAc -3' miRNA: 3'- -CGCG-----UGCG-CGCGUAGaa--GGUa----UAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 5875 | 0.67 | 0.852826 |
Target: 5'- cGUGCAUGCGCGCGgcgcaagauggccugUUUCCGgauggccgCGAg -3' miRNA: 3'- -CGCGUGCGCGCGUa--------------GAAGGUaua-----GCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 45675 | 0.67 | 0.856207 |
Target: 5'- aGCGCAuggugccgcacuuCGUGCGCAUCgagggCCGgcagccggccgugAUCGAg -3' miRNA: 3'- -CGCGU-------------GCGCGCGUAGaa---GGUa------------UAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 51782 | 0.67 | 0.860378 |
Target: 5'- cGCGCACGaaCGCGC-UCaca-GUGUCGAu -3' miRNA: 3'- -CGCGUGC--GCGCGuAGaaggUAUAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 39914 | 0.67 | 0.860378 |
Target: 5'- cUGCuggauCGCGCGCAUCgcgUCCA--UCa- -3' miRNA: 3'- cGCGu----GCGCGCGUAGa--AGGUauAGcu -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 51323 | 0.67 | 0.860378 |
Target: 5'- gGCGCAucCGCGCGCGgcaagaucgaaUCcgCCAUGcagcUCGGc -3' miRNA: 3'- -CGCGU--GCGCGCGU-----------AGaaGGUAU----AGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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